YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37526451, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37526451, gi|....

Description	E-value	Query Range	Subject Range
gi\|213580824 - gi\|213580824\|ref\|ZP_03362650.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213427975 - gi\|213427975\|ref\|ZP_03360725.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213418192 - gi\|213418192\|ref\|ZP_03351258.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|207857213, gi... - gi\|207857213\|ref\|YP_002243864.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|214003040 - gi\|214003040\|ref\|ZP_03413775.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213974793 - gi\|213974793\|ref\|ZP_03402052.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213646213 - gi\|213646213\|ref\|ZP_03376266.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213613244 - gi\|213613244\|ref\|ZP_03371070.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|29141633, gi\|... - gi\|29141633\|ref\|NP_804975.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|205341582, gi... - gi\|205341582\|gb\|EDZ28346.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar We... gi\|16760608 - gi\|16760608\|ref\|NP_456225.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|205347304, gi... - gi\|205347304\|gb\|EDZ33935.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar Ha... gi\|16502904, gi\|... - gi\|25325846\|pir\|\|AC0712 probable outer membrane protein STY1830 [imported] - Salmonella enterica sub... gi\|205336793, gi... - gi\|205336793\|gb\|EDZ23557.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar He... gi\|16419803, gi\|... - gi\|16764637\|ref\|NP_460252.1\| MltA-interacting protein A [Salmonella typhimurium LT2], gi\|16419803\|gb... gi\|205329758, gi... - gi\|205329758\|gb\|EDZ16522.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar 4,... gi\|197936956, gi... - gi\|198242440\|ref\|YP_002215849.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... gi\|197265083, gi... - gi\|197265083\|ref\|ZP_03165157.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|197251413, gi... - gi\|197251413\|ref\|YP_002146753.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... gi\|194406172, gi... - gi\|194447868\|ref\|YP_002045292.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=mipA] [protein=MltA-interacting protein A] [protein_id=YP_005237135.1] [location=1374166..1374... gi\|161363678, gi... - gi\|161614314\|ref\|YP_001588279.1\| hypothetical protein SPAB_02060 [Salmonella enterica subsp. enteric... gi\|238910897 - gi\|238910897\|ref\|ZP_04654734.1\| putative outer membrane protein [Salmonella enterica subsp. enterica...	265.0	[0..2]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINKAKILAT VAAFCLSSSL AYAGQWSIGA SVLAEASPYK GVKNKDKVLF VPMVNYESDN  60
   61 FYFHTLAAGY YLWNQPKDQL SLDVYYYPQN FRPKDNEDKQ MKKLDRRHDT MMGGFSYRHI 120
  121 EDWGTLRSSF AADTLGKSKG ITIDLAYLYE FKSDDWSLQP GLGVVWNSKK QNRYEYGIKD 180
  181 SESRHSGLEK YTPDDSWAPY LELSANYKFN QEWSVFMMGR VERLPSEIKD SPMVNKSYSS 240
  241 IVWTGVTYSF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1p4tA
Description:	Outer membrane protein NspA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits