YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36785479, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785479, gi|....

Description	E-value	Query Range	Subject Range
gi\|25305968, gi\|... - gi\|25305968\|pir\|\|AD0725 probable lipoprotein STY1949 [imported] - Salmonella enterica subsp. enteric... gi\|224583690, gi... - gi\|224583690\|ref\|YP_002637488.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|16760709 - gi\|16760709\|ref\|NP_456326.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16420351, gi\|... - gi\|16765160\|ref\|NP_460775.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164203... gi\|29141533, gi\|... - gi\|29141533\|ref\|NP_804875.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... lcl\|NC_016856.1_... - [gene=slp] [protein=putative outer membrane protein] [protein_id=YP_005237760.1] [location=complemen... gi\|62180383, gi\|... - gi\|62180383\|ref\|YP_216800.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|56413262, gi\|... - gi\|56413262\|ref\|YP_150337.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|205322087, gi... - gi\|205322087\|gb\|EDZ09926.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|161613671, gi... - gi\|161613671\|ref\|YP_001587636.1\| hypothetical protein SPAB_01395 [Salmonella enterica subsp. enteric... gi\|238912116 - gi\|238912116\|ref\|ZP_04655953.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|207856674, gi... - gi\|207856674\|ref\|YP_002243325.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|199602048, gi... - gi\|200389603\|ref\|ZP_03216214.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197940676, gi... - gi\|198246160\|ref\|YP_002215321.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|197093665, gi... - gi\|197362188\|ref\|YP_002141825.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|213855075 - gi\|213855075\|ref\|ZP_03383315.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213648048 - gi\|213648048\|ref\|ZP_03378101.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213618907 - gi\|213618907\|ref\|ZP_03372733.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213426607 - gi\|213426607\|ref\|ZP_03359357.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|205342716, gi... - gi\|205342716\|gb\|EDZ29480.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168259943, gi... - gi\|205351087\|gb\|EDZ37718.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168241412, gi... - gi\|205339388\|gb\|EDZ26152.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|205328682, gi... - gi\|205328682\|gb\|EDZ15446.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|197264193, gi... - gi\|197264193\|ref\|ZP_03164267.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197214965, gi... - gi\|197251262\|ref\|YP_002146204.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194410092, gi... - gi\|194451788\|ref\|YP_002045866.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194446640, gi... - gi\|194446640\|ref\|YP_002041076.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser...	262.0	[0..5]	[191..3]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVINYRTS VKALILLGVV MLTGCITVPD SVKGTSPTPV QDLLSVKSTP ELFIGQEGRF  60
   61 GGKVLGVVNE NHRTRLEISS LPLASDASPE LDEPSLGRIY VYVNDFLDPA DFKGNYVTVV 120
  121 GPIVGLKKGK IGCADYDYVV INVMGYQRWK VVQRVLMPYG PGPWNYYGYP YYSGWGWNWY 180
  181 SDPTPVETIL TR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.19382
Match:	PF03843.4
Description:	No description for PF03843.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits