YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36785412, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785412, gi|....

Description	E-value	Query Range	Subject Range
gi\|167424745, gi... - gi\|167424745\|ref\|ZP_02316498.1\| putative membrane protein [Yersinia pestis biovar Mediaevalis str. K... gi\|229897422, gi... - gi\|229897422\|ref\|ZP_04512578.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|167470767 - gi\|167470767\|ref\|ZP_02335471.1\| hypothetical protein YpesF_23517 [Yersinia pestis FV-1] gi\|229894722, gi... - gi\|229894722\|ref\|ZP_04509902.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970219... gi\|170024416, gi... - gi\|170024416\|ref\|YP_001720921.1\| hypothetical protein YPK_2185 [Yersinia pseudotuberculosis YPIII], ... gi\|162420248, gi... - gi\|77635373\|ref\|ZP_00797458.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|186895368, gi... - gi\|186895368\|ref\|YP_001872480.1\| hypothetical protein YPTS_2057 [Yersinia pseudotuberculosis PB1/+],... gi\|77629084, gi\|... - gi\|77629084\|ref\|ZP_00791670.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... Q66AY0\|Q66AY0_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis gi\|165926402, gi... - gi\|165926402\|ref\|ZP_02222234.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. F1... gi\|166009252, gi... - gi\|166009252\|ref\|ZP_02230150.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. E1979... gi\|166210794, gi... - gi\|166210794\|ref\|ZP_02236829.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. B4200... gi\|167401388, gi... - gi\|167401388\|ref\|ZP_02306885.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|166961773, gi... - gi\|167420078\|ref\|ZP_02311831.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. MG... gi\|108779304, gi... - gi\|108807391\|ref\|YP_651307.1\| hypothetical protein YPA_1395 [Yersinia pestis Antiqua], gi\|108779304\|... gi\|229680830, gi... - gi\|229901934\|ref\|ZP_04517055.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229680830\|g... gi\|145598402, gi... - gi\|145598402\|ref\|YP_001162478.1\| hypothetical protein YPDSF_1107 [Yersinia pestis Pestoides F], gi\|1... gi\|165938896, gi... - gi\|89104283\|ref\|ZP_01176830.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|149366056, gi... - gi\|149366056\|ref\|ZP_01888091.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149292469\|... gi\|16122255, gi\|... - gi\|218929123\|ref\|YP_002346998.1\| hypothetical protein YPO2012 [Yersinia pestis CO92], gi\|16122255\|re... gi\|51589608, gi\|... - gi\|51596326\|ref\|YP_070517.1\| hypothetical protein YPTB2000 [Yersinia pseudotuberculosis IP 32953], g... gi\|25510557 - pir\|\|AF0245 probable membrane protein YPO2012 [imported] - Yersinia pestis (strain CO92) gi\|45436526, gi\|... - gi\|45441664\|ref\|NP_993203.1\| hypothetical protein YP_1860 [Yersinia pestis biovar Microtus str. 9100... gi\|21959146, gi\|... - gi\|22126181\|ref\|NP_669604.1\| hypothetical protein y2296 [Yersinia pestis KIM], gi\|21959146\|gb\|AAM858... gi\|229898065, gi... - gi\|229898065\|ref\|ZP_04513216.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In...	148.0	[0..1]	[86..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQSAFIVG NVLMGVGMFT IVSSLVYTLL PHIFGFGWPE FLSEAALLGV FIGALVWLAG  60
   61 AGVGGREGVA DRYWWLRNYD ERYRRGSHRY P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits