YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36786862, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36786862, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129189, gi\|... - gi\|62181556\|ref\|YP_217973.1\| hypothetical protein SC2986 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ygfX] [protein=putative inner membrane protein] [protein_id=YP_005239181.1] [location=compleme... gi\|206710112, gi... - gi\|207858309\|ref\|YP_002244960.1\| hypothetical protein SEN2889 [Salmonella enterica subsp. enterica s... gi\|224584835, gi... - gi\|224584835\|ref\|YP_002638633.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197939731, gi... - gi\|198245215\|ref\|YP_002217023.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205273751, gi... - gi\|205353970\|ref\|YP_002227771.1\| hypothetical protein SG2941 [Salmonella enterica subsp. enterica se... gi\|238909845 - gi\|238909845\|ref\|ZP_04653682.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|197249800, gi... - gi\|197249800\|ref\|YP_002147958.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|197262800, gi... - gi\|197262800\|ref\|ZP_03162874.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194472287, gi... - gi\|194472287\|ref\|ZP_03078271.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|194712481, gi... - gi\|194736979\|ref\|YP_002115995.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168463786, gi... - gi\|195633635\|gb\|EDX52049.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|194446572, gi... - gi\|194446572\|ref\|YP_002042297.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|168231151, gi... - gi\|205334585\|gb\|EDZ21349.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205349207, gi... - gi\|205349207\|gb\|EDZ35838.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|205324745, gi... - gi\|205324745\|gb\|EDZ12584.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|16766347, gi\|... - gi\|16766347\|ref\|NP_461962.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164215... gi\|205327967, gi... - gi\|205327967\|gb\|EDZ14731.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|161365357, gi... - gi\|161615993\|ref\|YP_001589958.1\| hypothetical protein SPAB_03793 [Salmonella enterica subsp. enteric...	189.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLWKCDLRV SWHTQLISTC VHGAIALIVL FAPWPADDAI FWIFWLPLVL LIIASWGRSQ  60
   61 KNIRKSQGLL VLLSDNKLQW KKHEWQIIRR PWLCRYGVLI TAQSFYNQKK IRLWVASDGM 120
  121 PQDEWRNINQ LLLQYPDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.0
Match:	PF07254.3
Description:	No description for PF07254.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits