YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37527314, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37527314, gi|....

Description	E-value	Query Range	Subject Range
gi\|48696940, gi\|... - gi\|48696940\|ref\|YP_024703.1\| gp30 [Burkholderia phage BcepMu], gi\|44829503\|gb\|AAS47870.1\| gp30 [Burk... gi\|197295369, gi... - gi\|197295369\|ref\|YP_002153910.1\| phage Mu F virion morphogenesis protein [Burkholderia cenocepacia J...	366.0	[0..1]	[264..7]
gi\|75255743, gi\|... - gi\|75255743\|ref\|ZP_00727504.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	360.0	[0..1]	[265..8]
gi\|213610158 - gi\|213610158\|ref\|ZP_03369984.1\| hypothetical protein SentesTyp_06444 [Salmonella enterica subsp. ent... gi\|16760411 - gi\|16760411\|ref\|NP_456028.1\| hypothetical protein STY1617 [Salmonella enterica subsp. enterica serov... gi\|25512711, gi\|... - gi\|25512711\|pir\|\|AF0686 hypothetical protein STY1617 [imported] - Salmonella enterica subsp. enteric... gi\|29137453, gi\|... - gi\|29141825\|ref\|NP_805167.1\| hypothetical protein t1371 [Salmonella enterica subsp. enterica serovar... gi\|213648563 - gi\|213648563\|ref\|ZP_03378616.1\| hypothetical protein SentesTy_15524 [Salmonella enterica subsp. ente... gi\|213855900 - gi\|213855900\|ref\|ZP_03384140.1\| hypothetical protein SentesT_18445 [Salmonella enterica subsp. enter...	360.0	[0..1]	[265..8]
gi\|75228564, gi\|... - gi\|75228564\|ref\|ZP_00715198.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	358.0	[0..1]	[265..8]
gi\|85058815, gi\|... - gi\|85058815\|ref\|YP_454517.1\| hypothetical protein SG0837 [Sodalis glossinidius str. 'morsitans'], gi...	356.0	[0..1]	[265..8]
gi\|188488965, gi... - gi\|75512141\|ref\|ZP_00734713.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	356.0	[0..1]	[265..8]
gi\|34103449, gi\|... - gi\|34497593\|ref\|NP_901808.1\| hypothetical protein CV_2138 [Chromobacterium violaceum ATCC 12472], gi...	348.0	[0..1]	[265..6]
gi\|50122642, gi\|... - gi\|50122642\|ref\|YP_051809.1\| putative phage-related protein [Pectobacterium atrosepticum SCRI1043], ...	347.0	[0..1]	[264..8]
gi\|15834225, gi\|... - gi\|15834225\|ref\|NP_312998.1\| hypothetical protein ECs4971 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322777, gi... - gi\|217326556\|ref\|ZP_03442640.1\| F protein [Escherichia coli O157:H7 str. TW14588], gi\|217322777\|gb\|E... gi\|25376689 - pir\|\|C91250 hypothetical protein ECs4971 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|168761521, gi... - gi\|189368070\|gb\|EDU86486.1\| phage Mu protein F like protein [Escherichia coli O157:H7 str. EC4501], ... gi\|15834225, gi\|... - gi\|15834225\|ref\|NP_312998.1\| hypothetical protein ECs4971 [Escherichia coli O157:H7], gi\|13364447\|db...	323.0	[0..1]	[266..7]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYCMTLPPK RAIGYLQSKG YKITWDWEEL WQETHARAFT VAKVTRLDIL EDIRQALQQA  60
   61 LDEGKTDRWF RQELEPTLRR KGWWGTKETD DPVTGERVTV QQGSPWHLET IFRTNMSVLY 120
  121 SAGRWAEQME NIDDRPYWMY TGINDNHTRK SHLALHGLVF RSDDPFWQAF YPPNGWRCRC 180
  181 SVIALSHDDV RARGVKVMHS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.619789
Match:	PF04233.5
Description:	No description for PF04233.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [201-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKAMGWELKL VSQKTGEMQP VATFNTGITK VATDVGWSYS PGAAYRPDLA RYHGELSGLA  60
   61 RRELGRQNE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.694	N/A	N/A	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
View	Download	0.624	N/A	N/A	d.50.5	Description not found.
View	Download	0.568	N/A	N/A	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
View	Download	0.548	N/A	N/A	d.223.1	Polo domain
View	Download	0.529	N/A	N/A	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.503	N/A	N/A	b.40.6	MOP-like
View	Download	0.500	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.450	N/A	N/A	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.431	N/A	N/A	a.60.4	DNA repair protein Rad51, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits