YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37525839, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525839, gi|....

Description	E-value	Query Range	Subject Range
gi\|67154556 - gi\|67154556\|ref\|ZP_00416301.1\| Flagellar basal-body rod protein FlgC [Azotobacter vinelandii AvOP] gi\|67154556, gi\|... - gi\|67154556\|ref\|ZP_00416301.1\| Flagellar basal-body rod protein FlgC [Azotobacter vinelandii AvOP], ...	123.0	[0..1]	[133..1]
gi\|1857438 - gi\|1857438\|gb\|AAC45656.1\| FlgC [Proteus mirabilis]	122.0	[0..1]	[134..1]
gi\|83572535, gi\|... - gi\|83589621\|ref\|YP_429630.1\| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 3907...	122.0	[0..1]	[134..1]
gi\|50120637, gi\|... - gi\|50120637\|ref\|YP_049804.1\| flagellar basal body rod protein FlgC [Pectobacterium atrosepticum SCRI...	121.0	[0..1]	[134..1]
gi\|218249308, gi... - gi\|218249308\|ref\|YP_002374816.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7], g... gi\|221217671, gi... - gi\|221217671\|ref\|ZP_03589139.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a], gi... gi\|223888936, gi... - gi\|223888936\|ref\|ZP_03623527.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b], gi... gi\|224533191, gi... - gi\|224533191\|ref\|ZP_03673791.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23]... gi\|225370268, gi... - gi\|225549042\|ref\|ZP_03770017.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a], gi... gi\|195941353 - gi\|195941353\|ref\|ZP_03086735.1\| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi\|226234013, gi... - gi\|226320594\|ref\|ZP_03796154.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805], ... gi\|216264936, gi... - gi\|216264936\|ref\|ZP_03436928.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a], g... FLGC_BORBU - Flagellar basal-body rod protein FlgC OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 ... gi\|225550067, gi... - gi\|225550067\|ref\|ZP_03771027.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a], g... gi\|224533682, gi... - gi\|224533682\|ref\|ZP_03674270.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a... FLGC_BORBU - Flagellar basal-body rod protein flgC OS=Borrelia burgdorferi GN=flgC PE=3 SV=1	120.0	[0..1]	[134..1]
gi\|110890392, gi... - gi\|111115118\|ref\|YP_709736.1\| flagellar basal body rod protein FlgC [Borrelia afzelii PKo], gi\|11089...	120.0	[0..1]	[134..1]
gi\|4981925, gi\|1... - gi\|4981925\|gb\|AAD36435.1\|AE001790_7 flagellar basal-body rod protein FlgC [Thermotoga maritima MSB8]... gi\|7451224 - pir\|\|F72263 flagellar basal-body rod protein FlgC - Thermotoga maritima (strain MSB8)	120.0	[0..1]	[134..2]
gi\|165926046, gi... - gi\|165926046\|ref\|ZP_02221878.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orient... gi\|149366253, gi... - gi\|149366253\|ref\|ZP_01888288.1\| flagellar basal-body rod protein FlgC [Yersinia pestis CA88-4125], g... gi\|145598612, gi... - gi\|145598612\|ref\|YP_001162688.1\| flagellar basal body rod protein FlgC [Yersinia pestis Pestoides F]... gi\|165938792, gi... - gi\|89105474\|ref\|ZP_01177993.1\| COG1558: Flagellar basal body rod protein [Yersinia pestis biovar Ori... gi\|108779084, gi... - gi\|108807171\|ref\|YP_651087.1\| flagellar basal body rod protein FlgC [Yersinia pestis Antiqua], gi\|10... gi\|162420507, gi... - gi\|77636010\|ref\|ZP_00798088.1\| COG1558: Flagellar basal body rod protein [Yersinia pestis Angola], g... gi\|165990201, gi... - gi\|166010857\|ref\|ZP_02231755.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqu... gi\|166208224, gi... - gi\|166211044\|ref\|ZP_02237079.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqu... gi\|167049536, gi... - gi\|167401147\|ref\|ZP_02306650.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Antiqu... gi\|167420240, gi... - gi\|167420240\|ref\|ZP_02311993.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orient... gi\|229680314, gi... - gi\|229902867\|ref\|ZP_04517984.1\| flagellar basal-body rod protein FlgC [Yersinia pestis Nepal516], gi... gi\|167425758, gi... - gi\|167425758\|ref\|ZP_02317511.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Mediae... gi\|167469718 - gi\|167469718\|ref\|ZP_02334422.1\| flagellar basal-body rod protein FlgC [Yersinia pestis FV-1] gi\|169751183, gi... - gi\|170024649\|ref\|YP_001721154.1\| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis ... gi\|186895112, gi... - gi\|186895112\|ref\|YP_001872224.1\| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis ... gi\|77628872, gi\|... - gi\|77628872\|ref\|ZP_00791458.1\| COG1558: Flagellar basal body rod protein [Yersinia pseudotuberculosi... gi\|25298908 - pir\|\|AE0219 flagellar basal-body rod protein FlgC [imported] - Yersinia pestis (strain CO92) gi\|229896240, gi... - gi\|229896240\|ref\|ZP_04511410.1\| flagellar basal-body rod protein FlgC [Yersinia pestis Pestoides A],... gi\|229693512, gi... - gi\|229897175\|ref\|ZP_04512331.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orient... gi\|45436272, gi\|... - gi\|45441411\|ref\|NP_992950.1\| flagellar basal body rod protein FlgC [Yersinia pestis biovar Microtus ... gi\|229897901, gi... - gi\|229897901\|ref\|ZP_04513052.1\| flagellar basal-body rod protein FlgC [Yersinia pestis biovar Orient... gi\|22126392, gi\|... - gi\|22126392\|ref\|NP_669815.1\| flagellar basal body rod protein FlgC [Yersinia pestis KIM], gi\|2195937... gi\|16122052, gi\|... - gi\|218928920\|ref\|YP_002346795.1\| flagellar basal body rod protein FlgC [Yersinia pestis CO92], gi\|16... gi\|51589291, gi\|... - gi\|51596009\|ref\|YP_070200.1\| flagellar basal body rod protein FlgC [Yersinia pseudotuberculosis IP 3... Q66BU4\|Q66BU4_YERPS - Flagellar basal-body rod protein FlgC - Yersinia pseudotuberculosis	120.0	[0..1]	[134..1]
gi\|33596138 - gi\|33596138\|ref\|NP_883781.1\| flagellar basal body rod protein FlgC [Bordetella parapertussis 12822] gi\|33601539, gi\|... - gi\|33601539\|ref\|NP_889099.1\| flagellar basal body rod protein FlgC [Bordetella bronchiseptica RB50],... gi\|33573141 - gi\|33573141\|emb\|CAE36788.1\| flagellar basal-body rod protein FlgC [Bordetella parapertussis]	119.0	[0..1]	[134..1]
gi\|196196890, gi... - gi\|196253685\|ref\|ZP_03152300.1\| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM ... gi\|125713209, gi... - gi\|67875408\|ref\|ZP_00504748.1\| Flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC ...	119.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLSIFDIA GSALSAQSQR LNVSASNMAN ADSVAGPDGQ PYRAKQVVFR VAAPAGQETG  60
   61 GVRVSEIVDD PTPFRLEYQP GHPLADEKGY VRMPNVDVVG EMINTISASR SYQANVEVLN 120
  121 TTKSMMLKTL TLGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits