YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37525778, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525778, gi|....

Description	E-value	Query Range	Subject Range
gi\|62128133, gi\|... - gi\|62180500\|ref\|YP_216917.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|56127415, gi\|... - gi\|56413158\|ref\|YP_150233.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica serov... gi\|161613517, gi... - gi\|161613517\|ref\|YP_001587482.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|167552437, gi... - gi\|205322878\|gb\|EDZ10717.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sai... gi\|205327857, gi... - gi\|205327857\|gb\|EDZ14621.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar 4,[... gi\|205331990, gi... - gi\|205331990\|gb\|EDZ18754.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Ken... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium GN=motA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=motA] [protein=flagellar motor protein MotA] [protein_id=YP_005237891.1] [location=complement(... gi\|200389572, gi... - gi\|200389572\|ref\|ZP_03216183.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|204931070, gi... - gi\|204931070\|ref\|ZP_03221896.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|224468100, gi... - gi\|224583573\|ref\|YP_002637371.1\| flagellar motor protein [Salmonella enterica subsp. enterica serova... MOTA_SALTY - Chemotaxis protein motA OS=Salmonella typhimurium GN=motA PE=3 SV=1 gi\|194735541, gi... - gi\|194735541\|ref\|YP_002114960.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197248635, gi... - gi\|197248635\|ref\|YP_002146097.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|197244243, gi... - gi\|197265988\|ref\|ZP_03166062.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197937986, gi... - gi\|198243470\|ref\|YP_002215159.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|205342756, gi... - gi\|205342756\|gb\|EDZ29520.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Wel... gi\|194444912, gi... - gi\|194444912\|ref\|YP_002041190.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serova... gi\|194408818, gi... - gi\|194450514\|ref\|YP_002045978.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica s... gi\|194468783, gi... - gi\|194468783\|ref\|ZP_03074767.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar... gi\|197288649, gi... - gi\|197288649\|gb\|EDY28024.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Sch... gi\|238912500 - gi\|238912500\|ref\|ZP_04656337.1\| flagellar motor protein MotA [Salmonella enterica subsp. enterica se... gi\|168241556, gi... - gi\|205339404\|gb\|EDZ26168.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Hei... gi\|205350824, gi... - gi\|205350824\|gb\|EDZ37455.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar Had... gi\|195634498, gi... - gi\|195634498\|gb\|EDX52850.1\| chemotaxis protein MotA [Salmonella enterica subsp. enterica serovar New... MOTA_SALTY - Motility protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=motA PE=3 SV=1	255.0	[0..1]	[294..1]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLLGYIVV FGAVIGGYLI VGGHLGALYQ PAEFLIITGA GIGAFIVGNN GKAIKATLRV  60
   61 LPKVMRRSKY NKVMYMDLMA LLFRLLAKSR MHGVLALERD IEHPQQSDIF TQYPRLLKDK 120
  121 HLMDFITDYM RLIVSGN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPHEIEALM DEEIETYEQE SEIPATSLMM VGDSLPAFGI VAAVMGVVNA LGSADRPAGE  60
   61 LGVLIAHAMV GTFLGILLAY GFISPLATLL RQRSGEHLKM MQCIKVTLLS SLNGYAPQIA 120
  121 VEFGRKTLYL TDRPSFTELE EHVRRVKAPV QQETEEQV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits