YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37525716, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525716, gi|....

Description	E-value	Query Range	Subject Range
gi\|5458547, gi\|7... - pir\|\|F75091 hypothetical protein PAB1624 - Pyrococcus abyssi (strain Orsay), gi\|5458547\|emb\|CAB50035... gi\|5458547, gi\|1... - gi\|5458547\|emb\|CAB50035.1\| Hypothetical protein [Pyrococcus abyssi GE5], gi\|14521329\|ref\|NP_126804.1...	149.0	[0..1]	[137..10]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQKIADIL KRVKTIALVG ASEKTARPSY KVMAYLLEQG YQVIPVSPKL AGQTLLGQRV  60
   61 YAQLADIPQA VDMVDVFRNA DAAYDIAREA IDIKAKVLWL QLGVINEQAK ILAEEAGLDV 120
  121 VMDRCPKIEI PRLGLEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	2duwA
Description:	No description for 2duwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits