YRC Public Data Repository - Protein Structure Prediction

Protein:	DCD_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCD_PHOLL.

Description	E-value	Query Range	Subject Range
DCD_YERPA - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dcd PE=3 SV=... DCD_YERPN - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dcd PE=3 SV... gi\|167056813, gi... - gi\|167423964\|ref\|ZP_02315717.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Mediaev... gi\|167467521 - gi\|167467521\|ref\|ZP_02332225.1\| deoxycytidine triphosphate deaminase [Yersinia pestis FV-1] DCD_YERPY - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=d... DCD_YERPB - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dc... gi\|166009184, gi... - gi\|166009184\|ref\|ZP_02230082.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... DCD_YERPE - Deoxycytidine triphosphate deaminase OS=Yersinia pestis GN=dcd PE=3 SV=1 gi\|166207321, gi... - gi\|166211550\|ref\|ZP_02237585.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... gi\|167050229, gi... - gi\|167400280\|ref\|ZP_02305793.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... DCD_YERPS - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis GN=dcd PE=3 SV=1 gi\|167421824, gi... - gi\|167421824\|ref\|ZP_02313577.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|161511408 - gi\|161511408\|ref\|NP_992778.2\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Microtus ... DCD_YERPG - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dcd PE=3 SV=1 gi\|165923376, gi... - gi\|165924316\|ref\|ZP_02220148.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|165939553, gi... - gi\|165939553\|ref\|ZP_02228098.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|161484779 - gi\|161484779\|ref\|NP_669947.2\| deoxycytidine triphosphate deaminase [Yersinia pestis KIM] DCD_YERPS - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=d... DCD_YERP3 - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) ... gi\|115347277, gi... - gi\|218928666\|ref\|YP_002346541.1\| deoxycytidine triphosphate deaminase [Yersinia pestis CO92], gi\|161... gi\|149366446, gi... - gi\|149366446\|ref\|ZP_01888480.1\| deoxycytidine triphosphate deaminase [Yersinia pestis CA88-4125], gi... DCD_YERPP - Deoxycytidine triphosphate deaminase OS=Yersinia pestis (strain Pestoides F) GN=dcd PE=3 SV=1 gi\|229697872, gi... - gi\|229841506\|ref\|ZP_04461665.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis biovar O... gi\|229689225, gi... - gi\|229843617\|ref\|ZP_04463760.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis biovar O... gi\|229703679, gi... - gi\|229894281\|ref\|ZP_04509464.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis Pestoide...	214.0	[0..1]	[193..1]

Back

Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLCDRDIIK WLDEGKLVIA PRPPIERING ATADVRLGNQ FRVFCGHTAA YIDLSGPKDE  60
   61 VSAALDRVMS DEIILPDDEV FFLHPGELAL AVTLESVTLP DDLVGWLDGR SSLARLGLMV 120
  121 HVTAHRIDPG WHGQIVLEFY NSGKLPLALR PGMVIGALSF EPLSGSADRP YNRRQDAKYK 180
  181 NQQGAVSSRI DED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1xs1A
Description:	dCTP deaminase from Escherichia coli in complex with dUTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphate diphosphatase activity	4.9446386219436	bayes_pls_golite062009
dUTP diphosphatase activity	4.92207428503442	bayes_pls_golite062009
dCTP deaminase activity	4.60235481565849	bayes_pls_golite062009
catalytic activity	1.71668532866244	bayes_pls_golite062009
hydrolase activity	1.63889579722321	bayes_pls_golite062009
deaminase activity	0.569997469329081	bayes_pls_golite062009
peroxisome proliferator activated receptor binding	0.383360698341246	bayes_pls_golite062009
binding	0.15452287545479	bayes_pls_golite062009
pyrimidine deoxyribonucleotide binding	0.0405835740740832	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: