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View Structure Prediction Details

Protein: gi|37525350, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 85 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525350, gi|....

Description E-value Query
Range
Subject
Range
tr|S5EX98|S5EX98... - PTS sugar transporter OS=Serratia liquefaciens ATCC 27592 GN=M495_17760 PE=4 SV=1
gi|118015420, gi... - gi|157371685|ref|YP_001479674.1| phosphohistidinoprotein-hexose phosphotransferase component of PTS ...
gi|21039016 - gi|21039016|dbj|BAB92987.1| HPr of PTS system [Serratia marcescens]
112.0 [0..1] [85..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQQEVTITA PNGLHTRPAA QFVKEAKSFA SDITLTSGGK TASAKSLFKL QTLGLTQGTV  60
   61 VTISAEGEDE QKAIEHLVKL MAELE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.30103
Match: 1ggrB
Description: Histidine-containing phosphocarrier protein (HPr)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity 5.70778264466435 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 4.7398246519874 bayes_pls_golite062009
transporter activity 1.94557075462337 bayes_pls_golite062009
transmembrane transporter activity 1.8285077384404 bayes_pls_golite062009
active transmembrane transporter activity 1.73790085561506 bayes_pls_golite062009
substrate-specific transporter activity 1.57976971135135 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.4723961195197 bayes_pls_golite062009
catalytic activity 1.16445344378552 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.97685688328333 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.61783246115451 bayes_pls_golite062009
binding 0.569728786489819 bayes_pls_golite062009
transferase activity 0.012084288205722 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle