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View Structure Prediction Details

Protein: gi|37525294, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525294, gi|....

Description E-value Query
Range
Subject
Range
gi|21104364 - gi|21104364|dbj|BAB93452.1| flavodoxin [Actinobacillus actinomycetemcomitans]
181.0 [0..1] [174..1]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIGIFFGS DTGNTENIAK KIQKILGSDI AEVHDIAKSS KEDIEQFDIL LLGIPTWYYG  60
   61 EAQCDWDDFF PTLEEIDFEG KLVALFGCGD QEDYAEYFCD AMGTIRDIIE PRGAIIVGHW 120
  121 PTEGYHFEES KGLADDSHFI GLAIDEDRQP ELTEERVNAW TKQIYEELSL SEILAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.045757
Match: 1ag9A
Description: Flavodoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 2.0467816962267 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 1.85486974695416 bayes_pls_golite062009
binding 0.681337940863521 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 0.650874844500866 bayes_pls_golite062009
catalytic activity 0.275631658558537 bayes_pls_golite062009
coenzyme binding 0.265571968246766 bayes_pls_golite062009
protein binding 0.251879151875848 bayes_pls_golite062009
FMN binding 0.056297096581433 bayes_pls_golite062009
cofactor binding 0.0451815885965905 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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