YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37525276, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525276, gi|....

Description	E-value	Query Range	Subject Range
CORC_ECOLI - Magnesium and cobalt efflux protein corC - Escherichia coli gi\|89107527, gi\|... - gi\|89107527\|ref\|AP_001307.1\| predicteed ion transport [Escherichia coli str. K-12 substr. W3110], gi... gi\|81240083, gi\|... - gi\|82775935\|ref\|YP_402282.1\| putative transport protein [Shigella dysenteriae Sd197], gi\|81240083\|gb... gi\|82543102, gi\|... - gi\|82543102\|ref\|YP_407049.1\| putative transport protein [Shigella boydii Sb227], gi\|81244513\|gb\|ABB6... gi\|75209029, gi\|... - gi\|75209029\|ref\|ZP_00709289.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli B1... gi\|75228115, gi\|... - gi\|75228115\|ref\|ZP_00714786.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli B7... gi\|157154891, gi... - gi\|75189696\|ref\|ZP_00702963.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli E2... gi\|254791821, gi... - gi\|254791821\|ref\|YP_003076658.1\| predicted ion transport [Escherichia coli O157:H7 str. TW14359], gi... gi\|157065826, gi... - gi\|75194835\|ref\|ZP_00704905.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli HS... gi\|254160737, gi... - gi\|254160737\|ref\|YP_003043845.1\| predicteed ion transport [Escherichia coli B str. REL606], gi\|25397... gi\|192930924, gi... - gi\|75258606\|ref\|ZP_00730013.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli E2... gi\|253325402, gi... - gi\|254287525\|ref\|YP_003053273.1\| predicted ion transport [Escherichia coli BL21(DE3)], gi\|253976832\|... gi\|73854671, gi\|... - gi\|74311194\|ref\|YP_309613.1\| putative transport protein [Shigella sonnei Ss046], gi\|73854671\|gb\|AAZ8... gi\|242376432, gi... - gi\|251784159\|ref\|YP_002998463.1\| hypothetical protein B21_00617 [Escherichia coli BL21], gi\|24237643... gi\|75236639, gi\|... - gi\|75236639\|ref\|ZP_00720727.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli E1... gi\|238899935, gi... - gi\|238899935\|ref\|YP_002925731.1\| predicteed ion transport [Escherichia coli BW2952], gi\|238863269\|gb... gi\|191173990, gi... - gi\|75237589\|ref\|ZP_00721620.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli F1... gi\|226898583, gi... - gi\|237707373\|ref\|ZP_04537854.1\| magnesium and cobalt efflux protein CorC [Escherichia sp. 3_2_53FAA]... gi\|15829950, gi\|... - gi\|15829950\|ref\|NP_308723.1\| putative transport protein [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|227838454, gi... - gi\|227884368\|ref\|ZP_04002173.1\| HCC family HlyC/CorC transporter [Escherichia coli 83972], gi\|227838... gi\|110640880, gi... - gi\|110640880\|ref\|YP_668608.1\| magnesium and cobalt efflux protein CorC [Escherichia coli 536], gi\|11... gi\|110614242, gi... - gi\|110804694\|ref\|YP_688214.1\| putative transport protein [Shigella flexneri 5 str. 8401], gi\|1106142... gi\|194421187, gi... - gi\|83584744\|ref\|ZP_00923407.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli 10... gi\|187730106, gi... - gi\|75175875\|ref\|ZP_00696062.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Shigella boydii BS5... gi\|91209701, gi\|... - gi\|91209701\|ref\|YP_539687.1\| putative transport protein [Escherichia coli UTI89], gi\|91071275\|gb\|ABE... EG13654 - putative ion transport / Heat shock protein, putative Co2+ and Mg2+ efflux protein; contains two CBS... CORC_ECO57 - Magnesium and cobalt efflux protein CorC OS=Escherichia coli O157:H7 GN=corC PE=3 SV=1 gi\|168764666, gi... - gi\|189365370\|gb\|EDU83786.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|30040400, gi\|... - gi\|30062155\|ref\|NP_836326.1\| putative transport protein [Shigella flexneri 2a str. 2457T], gi\|300404... gi\|189363369, gi... - gi\|189363369\|gb\|EDU81788.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|12513564, gi\|... - gi\|15800371\|ref\|NP_286383.1\| putative transport protein [Escherichia coli O157:H7 EDL933], gi\|125135... gi\|168777602, gi... - gi\|187767193\|gb\|EDU31037.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... EG13654 - putative ion transport / Heat shock protein, putative Co2+ and Mg2+ efflux protein; contains two CBS... gi\|189002721, gi... - gi\|189002721\|gb\|EDU71707.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|168786507, gi... - gi\|189373537\|gb\|EDU91953.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|168802433, gi... - gi\|189375559\|gb\|EDU93975.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|170020985, gi... - gi\|170020985\|ref\|YP_001725939.1\| transporter-associated region [Escherichia coli ATCC 8739], gi\|1697... gi\|170080338, gi... - gi\|170080338\|ref\|YP_001729658.1\| ion transport [Escherichia coli str. K-12 substr. DH10B], gi\|169888... gi\|168752227, gi... - gi\|188013889\|gb\|EDU52011.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|189354848, gi... - gi\|189354848\|gb\|EDU73267.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 str. ... gi\|217325431, gi... - gi\|217325431\|ref\|ZP_03441515.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 s... gi\|218357306, gi... - gi\|218549765\|ref\|YP_002383556.1\| putative protein involved in divalent ion export [Escherichia fergu... gi\|218359968, gi... - gi\|218553200\|ref\|YP_002386113.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|218364358, gi... - gi\|218557589\|ref\|YP_002390502.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|218688475, gi... - gi\|218688475\|ref\|YP_002396687.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|218694097, gi... - gi\|218694097\|ref\|YP_002401764.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|218699022, gi... - gi\|218699022\|ref\|YP_002406651.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|218703991, gi... - gi\|218703991\|ref\|YP_002411510.1\| putative protein involved in divalent ion export [Escherichia coli ... gi\|170520447, gi... - gi\|170682729\|ref\|YP_001742776.1\| magnesium and cobalt efflux protein CorC [Escherichia coli SMS-3-5]... gi\|195939395 - gi\|195939395\|ref\|ZP_03084777.1\| ion transport [Escherichia coli O157:H7 str. EC4024] gi\|117622867, gi... - gi\|117622867\|ref\|YP_851780.1\| putative transport protein [Escherichia coli APEC O1], gi\|115511991\|gb... gi\|208806832, gi... - gi\|208806832\|ref\|ZP_03249169.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 s... gi\|124529693, gi... - gi\|124529693\|ref\|ZP_01700600.1\| transporter-associated region [Escherichia coli B], gi\|124499696\|gb\|... gi\|208815486, gi... - gi\|208815486\|ref\|ZP_03256665.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 s... CORC_SHIFL - Magnesium and cobalt efflux protein CorC OS=Shigella flexneri GN=corC PE=3 SV=1 gi\|208737218, gi... - gi\|208823025\|ref\|ZP_03263343.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 s... CORC_ECOL6 - Magnesium and cobalt efflux protein CorC OS=Escherichia coli O6 GN=corC PE=3 SV=1 gi\|209398266, gi... - gi\|209398266\|ref\|YP_002269293.1\| magnesium and cobalt efflux protein CorC [Escherichia coli O157:H7 ... CORC_ECOL6 - Magnesium and cobalt efflux protein CorC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UP... gi\|209917920, gi... - gi\|209917920\|ref\|YP_002292004.1\| hypothetical protein ECSE_0729 [Escherichia coli SE11], gi\|20991117... gi\|24112044, gi\|... - gi\|24112044\|ref\|NP_706554.1\| putative transport protein [Shigella flexneri 2a str. 301], gi\|24050867... gi\|215485691, gi... - gi\|215485691\|ref\|YP_002328122.1\| predicted ion transport [Escherichia coli O127:H6 str. E2348/69], g...	234.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDHPSSND NPSPKKGFFT LLLNQLFHGE PKSRDELVEL IRDSEQNDLI DPDTRDMLEG  60
   61 VMDISDQRVR DIMIPRSQIV TLKRNQTLDE CLDVIIDSAH SRFPVISEDK DHIEGILMAK 120
  121 DLLPFMRTDS PPFSIDKVLR QAVVVPESKR VDRMLKEFRS QRYHMAIVID EFGGVSGLVT 180
  181 IEDILELIVG EIEDEYDEEE DVDIRALSRH TYTVRALTQI EDFNEAFSTQ FSDEEVDTIG 240
  241 GLVMQAFGHL PARGESVDIN GYLFKVAMAD SRRIIQVYVT IPDDAPIPNL EEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits