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View Structure Prediction Details

Protein: gi|37524220, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 227 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37524220, gi|....

Description E-value Query
Range
Subject
Range
gi|56480335, gi|... - gi|56480335|ref|NP_709190.2| hypothetical protein SF3436 [Shigella flexneri 2a str. 301], gi|5638388...
gi|110616796, gi... - gi|110807248|ref|YP_690768.1| gluconate periplasmic binding protein [Shigella flexneri 5 str. 8401],...
gi|30043564, gi|... - gi|30065302|ref|NP_839473.1| hypothetical protein S4330 [Shigella flexneri 2a str. 2457T], gi|300435...
175.0 [0..1] [227..17]

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Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTMVGYCWL CHQPLWFPHH GVCSFCNKRL KRLANMCPCC ALPSELPSLP CGRCLKKPPL  60
   61 WENMIAITDY CPPLSGLIRR YKYHRTPQLA SVLARLFLLH WQQGYRDGRW YKPNILLSVP 120
  121 LHRHRRWKRG FDQSVLMAKQ LSEWLQCDYQ QSFLQRTHAT LPQRNLSAAR RKINLRKAFQ 180
  181 LCGSVTGQHV AILDDVITTG ATMTEISRLL IRAGARSVQV WAICRTL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 1dkrA
Description: Phosphoribosylpyrophosphate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.13215401486422 bayes_pls_golite062009
transferase activity 2.01480567121657 bayes_pls_golite062009
diphosphotransferase activity 1.2980439591794 bayes_pls_golite062009
transferase activity, transferring pentosyl groups 0.899227917236164 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.782718700399924 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle