YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|37524835, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37524835, gi|....

Description E-value Query
Range
Subject
Range
gi|81243500, gi|... - gi|82779352|ref|YP_405701.1| sorbose-permease PTS system IIC component [Shigella dysenteriae Sd197],...
254.0 [0..3] [261..6]

Back

Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDAILIGL LAGLAGVDLF DGLTHFHRPV VIGPLVGLIL GDVQTGLLVG GTLELVWMGM  60
   61 VPLAGAQPPN VVIGGVIGTA FAILTHADPK VAIGIAVPFS IAVQGCITLL FTLFSPMMHK 120
  121 CDQMVKALNW RGVERVNYLG ITILFCFYFI VAFLPVYF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GADAASVMVQ KAPQWLLDGL AVAGGMMPAI GFSMLMKIMM KKSYIAYFIL GFISVTFLNM  60
   61 PIIAVALGAF AIALIDFFNR SRMEEAAERS VSTTQSHTQS QEMEDGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle