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View Structure Prediction Details

Protein: gi|36784176, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784176, gi|....

Description E-value Query
Range
Subject
Range
gi|194407237, gi... - gi|194448933|ref|YP_002046897.1| crispr-associated protein, Cse3 family [Salmonella enterica subsp. ...
gi|167993180, gi... - gi|205328771|gb|EDZ15535.1| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter...
gi|205338034, gi... - gi|205338034|gb|EDZ24798.1| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter...
gi|16766245, gi|... - gi|16766245|ref|NP_461860.1| putative cytoplasmic protein [Salmonella typhimurium LT2], gi|16421489|...
lcl|NC_016856.1_... - [gene=ygcH] [protein=putative cytoplasmic protein] [protein_id=YP_005239052.1] [location=complement(...
258.0 [0..1] [223..1]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSKIVLRQ SSQTANILAK LSANGVYTSH QLLWKLFSTD EKRQFLFREE IGIMGLPVFY  60
   61 VLSKTSPQTE SPLFEVETKA FYPQLKEGQR LAFKLRVNPT ICITDPSGKR QRHDVLMHAK 120
  121 FQAKQQGETE QGKIKAMMEN AARNWLLNHR RMQQWGIQFD NLLDIEGYTQ HRSVKKQGQK 180
  181 IQFSSVDFQG LLTITNGELY LEQYAKGFGR AKAMGCGLML IRTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 1wj9A
Description: Crystal structure of a CRISPR-associated protein from thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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