YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37524748, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37524748, gi|....

Description	E-value	Query Range	Subject Range
gi\|213612517 - gi\|213612517\|ref\|ZP_03370343.1\| hypothetical protein SentesTyp_08457 [Salmonella enterica subsp. ent... gi\|213648301 - gi\|213648301\|ref\|ZP_03378354.1\| hypothetical protein SentesTy_14049 [Salmonella enterica subsp. ente... gi\|213852774 - gi\|213852774\|ref\|ZP_03382306.1\| hypothetical protein SentesT_07881 [Salmonella enterica subsp. enter... gi\|214003249 - gi\|214003249\|ref\|ZP_03413984.1\| hypothetical protein Salmonellentericaenterica_24426 [Salmonella ent... gi\|29143198, gi\|... - gi\|29143198\|ref\|NP_806540.1\| hypothetical protein t2843 [Salmonella enterica subsp. enterica serovar... gi\|213160950 - gi\|213160950\|ref\|ZP_03346660.1\| hypothetical protein Salmoneentericaenterica_13248 [Salmonella enter... gi\|16761714 - gi\|16761714\|ref\|NP_457331.1\| hypothetical protein STY3069 [Salmonella enterica subsp. enterica serov... gi\|213416575 - gi\|213416575\|ref\|ZP_03349719.1\| hypothetical protein Salmonentericaenterica_00741 [Salmonella enteri... gi\|213424932 - gi\|213424932\|ref\|ZP_03357682.1\| hypothetical protein SentesTyphi_04061 [Salmonella enterica subsp. e... gi\|25372486, gi\|... - gi\|25372486\|pir\|\|AI0857 hypothetical protein STY3069 [imported] - Salmonella enterica subsp. enteric... gi\|213580175 - gi\|213580175\|ref\|ZP_03362001.1\| hypothetical protein SentesTyph_02750 [Salmonella enterica subsp. en... gi\|197363817, gi... - gi\|197363817\|ref\|YP_002143454.1\| hypothetical protein SSPA2609 [Salmonella enterica subsp. enterica ... gi\|56414889, gi\|... - gi\|56414889\|ref\|YP_151964.1\| hypothetical protein SPA2798 [Salmonella enterica subsp. enterica serov...	213.0	[0..9]	[185..21]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKSEIILL HWWQSMFMSP KQLKEKGIIP APSTYRAQLK RCDSVEMAML TEGFRALWLS  60
   61 LPDEISLSDN PIKLEYWATM AVALVHVKNN SDIKLAVAAG KKGGGNKPVV SELRFSQLQN 120
  121 AKTPNELLRR LCRVLQQIKG NISVLALARD IEEWFAEYEQ LRPCKADRRI KVRWGMDYYR 180
  181 AASGKSVDLS DFH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.823909
Match:	PF09485.1
Description:	No description for PF09485.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits