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View Structure Prediction Details

Protein: RRF_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRF_PHOLL.

Description E-value Query
Range
Subject
Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1
RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...
255.0 [0..1] [185..1]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINEIKKDAQ DRMEKSVEAL KNQISKVRTG RASPSLLDGI IVEYYGAPTP LRQLANVIAE  60
   61 DARTLAITVF DRTMTPAIEK AIMASDLGLN PSSAGTTIRV PLPPLTEERR KDLIKVVRSE 120
  121 AEQGRVSVRN IRRDANDKIK ALLKDKEISE DDERRAQDDI QKLTDNFIKK VDEALTKKEE 180
  181 ELMEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.154902
Match: 1ek8A
Description: Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation regulator activity 4.3587179630028 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.16037247039451 bayes_pls_golite062009
nucleic acid binding 3.79085926340206 bayes_pls_golite062009
binding 2.89152455528061 bayes_pls_golite062009
translation termination factor activity 2.10810503428749 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle