YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36784055, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784055, gi|....

Description	E-value	Query Range	Subject Range
gi\|229679357, gi... - gi\|229903587\|ref\|ZP_04518700.1\| putative prepilin peptidase dependent protein [Yersinia pestis Nepal... gi\|108806486, gi... - gi\|108806486\|ref\|YP_650402.1\| putative prepilin peptidase dependent protein [Yersinia pestis Antiqua... gi\|229837725, gi... - gi\|229837725\|ref\|ZP_04457885.1\| putative prepilin peptidase dependent protein [Yersinia pestis Pesto... gi\|229697312, gi... - gi\|229840946\|ref\|ZP_04461105.1\| putative prepilin peptidase dependent protein [Yersinia pestis biova... gi\|22127043, gi\|... - gi\|22127043\|ref\|NP_670466.1\| hypothetical protein y3167 [Yersinia pestis KIM], gi\|21960094\|gb\|AAM867... gi\|25510028 - pir\|\|AI0124 probable prepilin peptidase dependent protein YPO1017 [imported] - Yersinia pestis (stra... gi\|16121318, gi\|... - gi\|218928186\|ref\|YP_002346061.1\| putative prepilin peptidase dependent protein [Yersinia pestis CO92... gi\|45442646, gi\|... - gi\|45442646\|ref\|NP_994185.1\| putative prepilin peptidase dependent protein [Yersinia pestis biovar M... gi\|229843046, gi... - gi\|229843046\|ref\|ZP_04463196.1\| putative prepilin peptidase dependent protein [Yersinia pestis biova... gi\|149366981, gi... - gi\|149366981\|ref\|ZP_01889014.1\| putative prepilin peptidase dependent protein [Yersinia pestis CA88-...	157.0	[0..9]	[119..23]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMKSELFYE HQAGMSLPEV MIAVMVFSVS LLGLMRYHQA LLFGFQQHWQ QSKADKLSYG  60
   61 YLEQYELIAG QNALPEITLP PGWHAEFQTA YPLSSCYQLT VIVMTPYNQQ SKASRLICSN 120
  121 GSSDV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.95
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits