| Protein: | LSM1B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 128 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM1B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
131.0 | [0..1] | [128..1] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MSWAGPEEIY LSTSLASYLD RKLLVLLRDG RKLMGTLRSF DQFANAVLEG ACERVIVGEQ 60
61 YCDIPLGLYV IRGENVVLIG ELDTEREELP PHMIRVSEAE IKRAQKVERE ASELRGTMRK 120
121 RMEFLDFD
|
| Detection Method: |  |
| Confidence: | 13.39794 |
| Match: | 1b34A |
| Description: | D1 core SNRNP protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.82012277803236 | bayes_pls_golite062009 | |
| RNA binding | 5.81718051012035 | bayes_pls_golite062009 |
| mRNA binding | 2.57166143288861 | bayes_pls_golite062009 |
| nucleic acid binding | 2.01251799254139 | bayes_pls_golite062009 |
| binding | 1.40692224793302 | bayes_pls_golite062009 |
