YRC Public Data Repository - Protein Structure Prediction

Protein:	IAR1_ARATH
Organism:	Arabidopsis thaliana
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IAR1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114619267 - gi\|114619267\|ref\|XP_531112.2\| PREDICTED: solute carrier family 39 (zinc transporter), member 14 [Pan...	268.0	[0..3]	[468..352]
S39AE_MOUSE - Zinc transporter ZIP14 OS=Mus musculus GN=Slc39a14 PE=1 SV=1	264.0	[0..3]	[468..49]
gi\|109085864 - gi\|109085864\|ref\|XP_001106660.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), ...	255.0	[0..3]	[468..302]
gi\|109502680, gi... - ref\|XP_224332.2\| similar to cDNA sequence BC021530 [Rattus norvegicus], gi\|109502680\|ref\|XP_00107014...	254.0	[0..3]	[468..49]
gi\|55729113 - gi\|55729113\|emb\|CAH91293.1\| hypothetical protein [Pongo abelii] gi\|55729113\|emb\|... - hypothetical protein [Pongo pygmaeus]	253.0	[0..3]	[468..94]
gi\|76624658 - gi\|76624658\|ref\|XP_593460.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	251.0	[0..3]	[468..117]
gi\|505102 - gi\|505102\|dbj\|BAA06685.1\| KIAA0062 [Homo sapiens]	250.0	[0..3]	[468..90]
gi\|73993770 - gi\|73993770\|ref\|XP_849535.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	242.0	[0..3]	[468..49]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSLRKLLV PILVLVLFLD LCVESGFSQS TPARDDHVHH HGGGCSHSHD HDHDHDHDHH  60
   61 VKKTTAKVEM KLPEELAEEE DMRLCGFGPC LHDHDHESSS TLTGFALWLN ALGCSLLVSL 120
  121 ASLICLVLLP IMFVQGKPSK WFVDSLALFG AGAMLGDAFL HQLPHAFGGG HSHSNDHHEN 180
  181 HDHHDHSHSD SPSHSHSIQD LSVGLSVLAG IVVFLLVEKL VRYVEENSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [230-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSNTWGHHHH HHHAGSKKLK DEGDHNNLDQ QSSSDAIVNS SEKVSGGSTD KSLRKRKTSA  60
   61 SDATDKSDSG TEITSDGKSD KPEQVET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.255	a.3.1	Cytochrome c
View	Download	0.255	a.3.1	Cytochrome c

Predicted Domain #3

Region A:
Residues: [317-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSSLVFGYL NLFSDGVHNF TDGMALGSAF LIYGSVGGWS RTMFLLAHEL PQEIGDFGIL  60
   61 VRSGFTVTKA LFFNFLSALV ALAGTALVLV WGNEPGQSSL IEGFTAGGFI YIAVAGVLAE 120
  121 MNNSGKSTLK NSACHLISLI LGMSVALCIS LIE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits