YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15241035, gi\|...
Organism:	Arabidopsis thaliana
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241035, gi|....

Description	E-value	Query Range	Subject Range
gi\|46107560, gi\|... - gi\|46107560\|ref\|XP_380839.1\| hypothetical protein FG00663.1 [Gibberella zeae PH-1], gi\|42545550\|gb\|E...	132.0	[0..3]	[93..99]
gi\|58257419 - gi\|58257419\|gb\|AAW69331.1\| hypothetical protein [Magnaporthe grisea] gi\|38109735, gi\|... - gi\|39950384\|ref\|XP_363284.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA55559....	131.0	[0..3]	[93..99]
gi\|88185957, gi\|... - gi\|88185957\|gb\|EAQ93425.1\| hypothetical protein CHGG_01660 [Chaetomium globosum CBS 148.51], gi\|1161...	130.0	[0..4]	[94..101]
RCF2_SCHPO - Respiratory supercomplex factor 2 homolog C1565.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... SPAC1565.01 - conserved fungal protein	122.0	[0..9]	[95..98]
gi\|125540101 - gi\|125540101\|gb\|EAY86496.1\| hypothetical protein OsI_07876 [Oryza sativa Indica Group] gi\|115447027, gi... - gi\|51964126\|ref\|XP_506846.1\| PREDICTED OSJNBa0016G10.13 gene product [Oryza sativa (japonica cultiva...	120.0	[0..1]	[88..9]
gi\|28926826, gi\|... - gi\|32422757\|ref\|XP_331822.1\| hypothetical protein [Neurospora crassa], gi\|28926826\|gb\|EAA35790.1\| co... gi\|85116256 - gi\|85116256\|ref\|XP_965026.1\| hypothetical protein NCU02623 [Neurospora crassa OR74A]	120.0	[0..4]	[94..101]
gi\|169597653, gi... - gi\|169597653\|ref\|XP_001792250.1\| hypothetical protein SNOG_01614 [Phaeosphaeria nodorum SN15], gi\|11...	114.0	[0..4]	[93..101]
gi\|19309405, gi\|... - gi\|41581303\|emb\|CAE47952.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309405\|emb...	112.0	[0..6]	[96..103]
gi\|92871677 - gi\|92871677\|gb\|ABE80615.1\| Hypoxia induced protein conserved region [Medicago truncatula]	112.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPKTKVAE IREWIIEHKL RTVGCLWLSG ISGSIAYNWS KPAMKTSVRI IHARLHAQAL  60
   61 TLAALAGAAA VEYYDHKSGA TDRIPKFLKP DNLNKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.954	a.2.15	Description not found.
View	Download	0.939	a.216.1	Description not found.
View	Download	0.930	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.925	a.29.13	Description not found.
View	Download	0.919	a.29.13	Description not found.
View	Download	0.913	a.29.13	Description not found.
View	Download	0.911	a.47.2	t-snare proteins
View	Download	0.901	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.822	a.7.7	BAG domain
View	Download	0.816	f.15.1	Small-conductance potassium channel
View	Download	0.742	a.7.8	GAT domain
View	Download	0.591	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.553	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.464	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.393	a.37.1	A DNA-binding domain in eukaryotic transcription factors

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits