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View Structure Prediction Details

Protein: gi|18416362, gi|...
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18416362, gi|....

Description E-value Query
Range
Subject
Range
gi|20093250, gi|... - gi|20093250|ref|NP_619325.1| dTDP-glucose 4,6-dehydratase [Methanosarcina acetivorans C2A], gi|19918...
192.0 [0..57] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-45]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2z5lA
Description: No description for 2z5lA was found.

Predicted Domain #2
Region A:
Residues: [46-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AETVHVPPPP TEKLLVLGGN GFVGSHVCKE ALDRGLSVSS LSRSGRSSLQ ESWASRVTWH  60
   61 QGNLLSSDLL KDALEGVTSV ISCVGGFGSN SYMYKINGTA NINAIRAASE KGVKRFVYIS 120
  121 AADFGLANYL LRGYYEGKRA AETELLTRFA YGGIILRPGF IYGTRSVGSM KIPLGVFGSP 180
  181 MEMVLQQAKP LNQLPLVGPL FTPPVNVESV AKVAVRAATD PVFPPGIVDV HGIQRYSQQK 240
  241 SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 1lrkA
Description: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle