YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21464270, gi\|...
Organism:	Homo sapiens
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21464270, gi|....

Description	E-value	Query Range	Subject Range
gi\|33304101 - gi\|33304101\|gb\|AAQ02558.1\| casein kinase 2, alpha 1 polypeptide [synthetic construct]	344.0	[0..1]	[391..1]
CSK21_BOVIN - Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1 gi\|73991511 - gi\|73991511\|ref\|XP_850579.1\| PREDICTED: similar to casein kinase II alpha 1 subunit isoform a isofor... gi\|123992852, gi... - gi\|61355747\|gb\|AAX41172.1\| casein kinase 2 alpha 1 polypeptide [synthetic construct], gi\|123999664\|g... tr\|M3W025\|M3W025... - Casein kinase 2 alpha 3 OS=Felis catus GN=CSNK2A3 PE=3 SV=1 gi\|109092533, gi... - gi\|109092535\|ref\|XP_001112363.1\| PREDICTED: similar to casein kinase II alpha 1 subunit isoform a is... CCDS13003.1_1 - null CSNK2A1 - casein kinase 2, alpha 1 polypeptide ENSOCUP000000191... - pep:known chromosome:oryCun2:4:8075122:8099798:-1 gene:ENSOCUG00000014722 transcript:ENSOCUT00000026...	344.0	[0..1]	[391..1]
gi\|86438576, gi\|... - gi\|88319941\|ref\|NP_777060.2\| casein kinase II alpha 1 subunit [Bos taurus], gi\|86438576\|gb\|AAI12817....	343.0	[0..1]	[391..1]
CSK21_MOUSE - Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=1 SV=2 gi\|117616982, gi... - gi\|117616984\|gb\|ABK42510.1\| CYGX [synthetic construct], gi\|117616982\|gb\|ABK42509.1\| CK2a1-rs [synthe...	342.0	[0..1]	[391..1]
CSK21_RAT - Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2	342.0	[0..1]	[391..1]
gi\|55730733 - gi\|55730733\|emb\|CAH92087.1\| hypothetical protein [Pongo abelii] gi\|197098768 - gi\|197098768\|ref\|NP_001126218.1\| casein kinase 2, alpha 1 polypeptide [Pongo abelii]	341.0	[0..1]	[391..1]
CSK21_CHICK - Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1	341.0	[0..1]	[391..1]
CSK21_RABIT - Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1	340.0	[0..1]	[391..1]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPVPSRAR VYTDVNTHRP REYWDYESHV VEWGNQDDYQ LVRKLGRGKY SEVFEAINIT  60
   61 NNEKVVVKIL KPVKKKKIKR EIKILENLRG GPNIITLADI VKDPVSRTPA LVFEHVNNTD 120
  121 FKQLYQTFTD YDIRFYMYEI LKALDYCHSM GIMHRDVKPH NVMIDHEHRK LRLIDWGLAE 180
  181 FYHPGQEYNV RVASRYFKGP ELLVDYQMYD YSLDMWSLGC MLASMIFRKE PFFHGRDNYD 240
  241 QLVRIAKVLG TEDLYGYIDK YNIELDPRFN DILGRHSRKR WERFVHRENQ HLVSPEALDF 300
  301 LDKLLRYDHQ SRLTAREAME HPYFYTVVKD QARMGSSSMP GGSTPVSSAN VMSGISSVPT 360
  361 PSPLGPLAGS PVIAAANPLG MPVPAAAGAQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.30103
Match:	1na7A
Description:	Crystal structure of the catalytic subunit of human protein kinase CK2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits