YRC Public Data Repository - Protein Structure Prediction

Protein:	FUCO2_ARATH
Organism:	Arabidopsis thaliana
Length:	843 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUCO2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7270376, gi\|4... - pir\|\|T04772 hypothetical protein F10M10.30 - Arabidopsis thaliana, gi\|7270376\|emb\|CAB80143.1\| hypoth...	723.0	[0..1]	[843..1]
gi\|222612646, gi... - gi\|78708252\|gb\|ABB47227.1\| large secreted protein, putative, expressed [Oryza sativa (japonica culti...	648.0	[0..42]	[840..25]
gi\|146300857, gi... - gi\|90587753\|ref\|ZP_01243406.1\| conserved hypothetical protein [Flavobacterium johnsoniae UW101], gi\|...	616.0	[0..49]	[813..23]
gi\|25333928 - pir\|\|B83755 hypothetical protein BH0842 [imported] - Bacillus halodurans (strain C-125) gi\|15613405, gi\|... - gi\|15613405\|ref\|NP_241708.1\| hypothetical protein BH0842 [Bacillus halodurans C-125], gi\|10173457\|db...	608.0	[0..52]	[812..1]
gi\|21107972, gi\|... - gi\|21242520\|ref\|NP_642102.1\| hypothetical protein XAC1774 [Xanthomonas axonopodis pv. citri str. 306...	588.0	[0..20]	[838..13]
gi\|66768787, gi\|... - gi\|66768787\|ref\|YP_243549.1\| hypothetical protein XC_2479 [Xanthomonas campestris pv. campestris str... gi\|21112850, gi\|... - gi\|21231206\|ref\|NP_637123.1\| hypothetical protein XCC1756 [Xanthomonas campestris pv. campestris str...	586.0	[0..20]	[838..16]
gi\|18310857, gi\|... - gi\|18310857\|ref\|NP_562791.1\| hypothetical protein CPE1875 [Clostridium perfringens str. 13], gi\|1814...	584.0	[0..10]	[826..4]

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Predicted Domain #1

Region A:
Residues: [1-843]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKSSFFVH FSCLLLLLTI IITCGEGVRN PVRPRSSERR ALMDGQDLSR PLKLTFGGPS  60
   61 RNWTDAIPIG NGRLGATIWG GVSSEILNIN EDTIWTGVPA DYTNQKAPEA LAEVRRLVDE 120
  121 RNYAEATSEA VKLSGQPSDV YQIVGDLNLE FDSSHRKYTQ ASYRRELDLE TAVAKVSYSV 180
  181 GAVDFSREFF ASNPDQVIIA KIYASKPGSL SFKVSFDSEL HHHSETNPKA NQILMRGSCR 240
  241 PKRLPVNLKK SINATNIPYD DHKGLQFASI LEVRVSNGGS VSSLGGKKLS VEKADWAVLL 300
  301 LAASSNFDGP FTMPVDSKID PAKECVNRIS SVQKYSYSDL YARHLGDYQK LFNRVSLHLS 360
  361 GSSTNETVQQ ATSTAERVRS FKTDQDPSLV ELLFQYGRYL LISSSRPGTQ VANLQGIWNR 420
  421 DIQPPWDGAP HLNINLQMNY WHSLPGNIRE CQEPLFDYMS ALAINGRKTA QVNYGASGWV 480
  481 AHQVSDIWAK TSPDRGEAVW ALWPMGGAWL CTHAWEHYTY TMDKEFLKKK GYPLLEGCTS 540
  541 FLLDWLIKGK DGFLQTNPST SPEHMFTAPI GKPASVSYSS TMDIAIIKEV FADIVSASEI 600
  601 LGKTNDTLIG KVIAAQAKLP PTRISKDGSI REWAEDFEDP EVHHRHVSHL FGLFPGHTIT 660
  661 VEKSPELAKA VEATLKKRGE EGPGWSTTWK AALWARLHNS EHAYRMVTHI FDLVDPLNER 720
  721 NYEGGLYSNM FTAHPPFQID ANFGFAAAVA EMLVQSTTKD LYLLPALPAD KWPNGIVNGL 780
  781 RARGGVTVSI KWMEGNLVEF GLWSEQIVST RIVYRGISAA AELLPGKVFT FDKDLRCIRT 840
  841 DKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	174.0
Match:	2rdyA
Description:	No description for 2rdyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits