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View Structure Prediction Details

Protein: gi|21655303, gi|...
Organism: Arabidopsis thaliana
Length: 462 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21655303, gi|....

Description E-value Query
Range
Subject
Range
gi|7413595, gi|1... - gi|7413595|emb|CAB86085.1| putative protein [Arabidopsis thaliana], pir||T48339 hypothetical protein...
368.0 [0..3] [462..1]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD  60
   61 FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR NRTNQKNFKN RNHSADIEEG 120
  121 VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG 180
  181 ERLLPIRRTR SVPTFFNKDG SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [236-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGEDVPEEEA VCRICMVEME EDEEAFKMEC MCKGELALAH KTCTIKWFTI KGNITCDVCK  60
   61 QEVRNLPVTL LRVQDSQNRS RAAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2d8sA
Description: No description for 2d8sA was found.

Predicted Domain #3
Region A:
Residues: [320-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIEISRFNNV WQDIPILVIV SMLAYFCFLE QLLIIDMKSS AVAIALPFSC IIGLLASMIS  60
   61 TTMVKKNYVW IYATVQFGFV VLFAQLFYRV VRFDVKQPVM CIVLATMIGF GLTMTGTTAI 120
  121 NEYLKWRRSN SHLPEEPAST QVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle