YRC Public Data Repository - Protein Structure Prediction

Protein:	RL7_BUCAP
Organism:	Buchnera aphidicola str. Sg (Schizaphis graminum)
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL7_BUCAP.

Description	E-value	Query Range	Subject Range
gi\|30410810 - gi\|30410810\|ref\|NP_660396.2\| 50S ribosomal protein L7/L12 [Buchnera aphidicola str. Sg (Schizaphis g...	133.0	[0..1]	[122..8]
RL7_BLOPB - 50S ribosomal protein L7/L12 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplL PE=3 SV=1	133.0	[0..1]	[122..1]
gi\|311087522\|gb\|... - 50S ribosomal protein L7/L12 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] RL7_BUCAI - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=rplL ... gi\|311086936\|gb\|... - 50S ribosomal protein L7/L12 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] RL7_BUCAI - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rplL PE=3 SV=1 RL7_BUCA5 - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplL P... gi\|25295074 - gi\|25295074\|pir\|\|B84934 50S ribosomal protein L7/L12 [imported] - Buchnera sp. (strain APS) RL7_BUCAT - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplL... gi\|311085783\|gb\|... - 50S ribosomal protein L7/L12 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi\|311086358\|gb\|... - 50S ribosomal protein L7/L12 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi\|257471096\|ref... - 50S ribosomal protein L7/L12 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]	131.0	[0..1]	[122..1]
RL7_BLOFL - 50S ribosomal protein L7/L12 OS=Blochmannia floridanus GN=rplL PE=3 SV=1	125.0	[0..1]	[122..1]
gi\|77024207 - gi\|77024207\|gb\|ABA55574.1\| chloroplast 50S ribosomal protein L7 [Pavlova lutheri]	123.0	[0..1]	[105..35]
gi\|52694926, gi\|... - gi\|52694932\|gb\|AAU85617.1\| 50S ribosomal protein L7/L12 [Borrelia garinii], gi\|52694926\|gb\|AAU85614....	123.0	[0..1]	[122..1]
gi\|52694924, gi\|... - gi\|52694924\|gb\|AAU85613.1\| 50S ribosomal protein L7/L12 [Borrelia afzelii], gi\|52694904\|gb\|AAU85603.... RL7_BORAP - 50S ribosomal protein L7/L12 OS=Borrelia afzelii (strain PKo) GN=rplL PE=3 SV=1 gi\|215979939, gi... - gi\|216263895\|ref\|ZP_03435889.1\| ribosomal protein L7/L12 [Borrelia afzelii ACA-1], gi\|215979939\|gb\|E...	121.0	[0..1]	[122..1]
RK12_SPIOL - 50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2	121.0	[0..4]	[121..63]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITKEQILE AVSEMSVMNV VELISAMEKK FGVSANMSVN TNNNSEKSTI EEKTEFDIFL  60
   61 KSIGPNKVSV IKSVRSATGL GLKEAKDLVE SAPTVLKENM SKNDAESLKK TLEDAGAEIE 120
  121 IK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1rquA
Description:	NMR structure of L7 dimer from E.coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits