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View Structure Prediction Details

Protein: gi|29028776, gi|...
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29028776, gi|....

Description E-value Query
Range
Subject
Range
gi|41618924 - gi|41618924|gb|AAS09982.1| MYB transcription factor [Arabidopsis thaliana]
320.0 [0..1] [387..1]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRRCSHCSN NGHNSRTCPT RGGGTCGGSG GGGGGGGGGG SGSSSAVKLF GVRLTDGSII  60
   61 KKSASMGNLS ALAVAAAAAT HHRLSPSSPL ATSNLNDSPL SDHARYSNLH HNEGYLSDDP 120
  121 AHGSGSSHRR GER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [134-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRGVPWTEEE HRLFLVGLQK LGKGDWRGIS RNYVTSRTPT QVASHAQKYF IRHTSSSRRK  60
   61 RRSSLFDMVT DEMVTDSSPT QEEQTLNGSS PSKEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.221849
Match: 1mseC
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [229-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKKSYLPSLE LSLNNTTEAE EVVATAPRQE KSQEAIEPSN GVSPMLVPGG FFPPCFPVTY  60
   61 TIWLPASLHG TEHALNAETS SQQHQVLKPK PGFAKERVNM DELVGMSQLS IGMATRHETE 120
  121 TSPSPLSLRL EPSRPSAFHS NGSVNGADLS KGNSAIQAI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle