YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: APM1_ARATH
Organism: Arabidopsis thaliana
Length: 879 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for APM1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-879]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQFKGEPRL PKFAVPKRYD LRLNPDLIAC TFTGTVAIDL DIVADTRFIV LNAADLSVND  60
   61 ASVSFTPPSS SKALAAPKVV LFEEDEILVL EFGEILPHGV GVLKLGFNGV LNDKMKGFYR 120
  121 STYEHNGEKK NMAVTQFEPA DARRCFPCWD EPACKATFKI TLEVPTDLVA LSNMPIMEEK 180
  181 VNGNLKIVSY QESPIMSTYL VAIVVGLFDY VEDHTSDGIK VRVYCQVGKA DQGKFALHVG 240
  241 AKTLDLFKEY FAVPYPLPKM DMIAIPDFAA GAMENYGLVT YRETALLYDE QHSAASNKQR 300
  301 VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA TDSLFPEWKI WTQFLDESTE 360
  361 GLRLDGLEES HPIEVEVNHA AEIDEIFDAI SYRKGASVIR MLQSYLGAEV FQKSLAAYIK 420
  421 NHAYSNAKTE DLWAALEAGS GEPVNKLMSS WTKQKGYPVV SAKIKDGKLE LEQSRFLSSG 480
  481 SPGEGQWIVP VTLCCGSYEK RKNFLLESKS GAYDLKELLG CSIADGSDKI NGTCSWIKIN 540
  541 VDQAGFYRVK YDDSLAAGLR NATESQSLTS IDRYGILDDS FALTMARQQS LASLLTLCSA 600
  601 YKKELDYTVL SNLIAISYKV VKIGADANQE LMSGIKHFFI GVFQFAAGKL GWDPKQGESH 660
  661 LDAMLRGEVL TALAVFGHDE TLKEAVRRFD AFLADRNTPL LPPDIRRAAY VAVMQRANKS 720
  721 DKSGYESLLR VYRETDLSQE KTRILGSLAS CPDPTIVQDV LNFVLSDEVR NQDALYGLSG 780
  781 VSWEGREVAW KWLQEKWEYI GNTWGSGFLI TRFISAVVSP FASFEKAKEV EEFFATRSKP 840
  841 SMARTLKQSI ERVHINANWV ESIKKEDNLT QLVAQLSSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 1z1wA
Description: Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle