YRC Public Data Repository - Protein Structure Prediction

Protein:	SQD2_ARATH
Organism:	Arabidopsis thaliana
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SQD2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|11357835, gi\|... - gi\|6759445\|emb\|CAB69850.1\| putative protein [Arabidopsis thaliana], pir\|\|T45962 hypothetical protein...	334.0	[0..1]	[510..1]
gi\|76800638 - gi\|76800638\|gb\|ABA55726.1\| sulfoquinovosyldiacylglycerol synthase type 2 [Vigna unguiculata]	324.0	[0..28]	[509..23]
gi\|50508912, gi\|... - gi\|88193764\|dbj\|BAE79759.1\| putative sulfolipid synthase [Oryza sativa Japonica Group], gi\|50933623\|...	301.0	[0..50]	[508..18]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	291.0	[0..104]	[485..1]
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	289.0	[0..104]	[477..1]
gi\|71675375, gi\|... - gi\|71675375\|ref\|ZP_00673120.1\| Glycosyl transferase, group 1 [Trichodesmium erythraeum IMS101], gi\|7...	285.0	[0..104]	[489..1]
gi\|81168271, gi\|... - gi\|81299390\|ref\|YP_399598.1\| sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein [Synechoc... gi\|56750953, gi\|... - gi\|56750953\|ref\|YP_171654.1\| sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein [Synechoc...	284.0	[0..104]	[482..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLSSINLS IPPHLLPSTT NTCSSSSATS CSPPRSSSFV LHSPLSFGHR RLPISKKSKL  60
   61 RFCGVITKEA VSGSNDMTIT QVREDDESEI DAPLLDPESL SKP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.229	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.200	d.74.3	RBP11-like subunits of RNA polymerase
View	Download	0.200	d.74.3	RBP11-like subunits of RNA polymerase

Predicted Domain #2

Region A:
Residues: [104-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRIALFVEPS PFAYVSGYKN RFQNFIRYLR EMGDEVIVVT THEGVPEEFY GARVIGSRSF  60
   61 PCPYYQKVPL SLALSPRIIS EIARFKPDII HASSPGVMVF GALAIAKMLS VPIVMSYHTH 120
  121 VPVYIPRYTF SWLVKPMWSI IRFLHRAADL TLVPSAAIGK DLIAAGATAA NQLRLWNKGV 180
  181 DSESFNPRFR SQEMRIRLSN GEPEKPLVIH VGRIGVEKSL ELLKSVMDKL PEARIAFIGD 240
  241 GPYKEDLEKL FTGMPAVFTG TLQGDELSQA YASGDVFVMP SESETLGLVV LEAMSSGLPV 300
  301 VAARAGGIPD IIPEDQEGKT GFLFNPGDVE DCVTKLRTLL HDRETREIIG KAAREETEKY 360
  361 DWRAATTKIR NEQYSAAIWF WRKKKVHVLG PINWLIKRLF PVPEGNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits