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View Structure Prediction Details

Protein: gi|28393484, gi|...
Organism: Arabidopsis thaliana
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28393484, gi|....

Description E-value Query
Range
Subject
Range
gi|28203058, gi|... - gi|28210620|ref|NP_781564.1| ribokinase [Clostridium tetani E88], gi|28203058|gb|AAO35501.1| ribokin...
232.0 [0..10] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCSDEAIP GQPIVLGCGQ LCLDYLVTVA SFPIPDQKIR GTSFKVQGGG NTGNALTCVA  60
   61 RLGLPCRILA KVADDSHGRY MVEELESSGV DTSFCMSAKD GASHFNYVIV DNQTNTRTCI 120
  121 YTPGYPPLLP DDLTESLLLD VLDGVRVLYV NGRSREAELL LAQKAHSKNI PILINAEKKR 180
  181 TGLDELIDLA DYAICSTNFP QEWTGAPSSP SALLSMLIRL PKLKFVIMTL GEHGCVMLER 240
  241 CSSEVSGSEE ETDIDELHES LKQSTDFTSV LPVCNSSGML QGDWL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 1gqtA
Description: Ribokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.21468720585581 bayes_pls_golite062009
transferase activity 1.02723496131053 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.99166926796598 bayes_pls_golite062009
kinase activity 0.93808159830136 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle