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View Structure Prediction Details

Protein: gi|15242147, gi|...
Organism: Arabidopsis thaliana
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242147, gi|....

Description E-value Query
Range
Subject
Range
gi|21537197 - gi|21537197|gb|AAM61538.1| homoserine dehydrogenase-like protein [Arabidopsis thaliana]
316.0 [0..1] [376..1]

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Predicted Domain #1
Region A:
Residues: [1-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND  60
   61 ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI AKLLGKSTGL AVVDCSASME 120
  121 TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII 180
  181 SSGDPVHRIV GSLSGTLGYV MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG 240
  241 LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC 300
  301 VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT 360
  361 AAGVLADIID LQDLFH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.154902
Match: 1ebfA
Description: Homoserine dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.01837452906823 bayes_pls_golite062009
oxidoreductase activity 1.59589847097527 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle