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View Structure Prediction Details

Protein: GUX3_ARATH
Organism: Arabidopsis thaliana
Length: 618 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GUX3_ARATH.

Description E-value Query
Range
Subject
Range
gi|3540195, gi|7... - pir||T00444 hypothetical protein T14N5.1 - Arabidopsis thaliana, gi|3540195|gb|AAC34345.1| Unknown p...
699.0 [0..1] [618..584]
gi|50931439, gi|... - gi|50931439|ref|XP_475247.1| putative glycogenin [Oryza sativa (japonica cultivar-group)], gi|463911...
679.0 [0..1] [610..44]
gi|60657592 - gi|60657592|gb|AAX33317.1| secondary cell wall-related glycosyltransferase family 8 [Populus tremula...
654.0 [0..3] [618..4]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPSSSPMES RHRLSFSNEK TSRRRFQRIE KGVKFNTLKL VLICIMLGAL FTIYRFRYPP  60
   61 LQIPEIPTSF GLTTDPRYVA TAEINWNHMS NLVEKHVFGR SEYQGIGLIN LNDNEIDRFK 120
  121 EVTKSDCDHV ALHLDYAAKN ITWESLYPEW IDEVEEFEVP TCPSLPLI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [169-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIPGKPRIDL VIAKLPCDKS GKWSRDVARL HLQLAAARVA ASSKGLHNVH VILVSDCFPI  60
   61 PNLFTGQELV ARQGNIWLYK PNLHQLRQKL QLPVGSCELS VPLQAKDNFY S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-618]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGAKKEAYAT ILHSAQFYVC GAIAAAQSIR MSGSTRDLVI LVDETISEYH KSGLVAAGWK  60
   61 IQMFQRIRNP NAVPNAYNEW NYSKFRLWQL TEYSKIIFID ADMLILRNID FLFEFPEISA 120
  121 TGNNATLFNS GLMVVEPSNS TFQLLMDNIN EVVSYNGGDQ GYLNEIFTWW HRIPKHMNFL 180
  181 KHFWEGDEPE IKKMKTSLFG ADPPILYVLH YLGYNKPWLC FRDYDCNWNV DIFQEFASDE 240
  241 AHKTWWRVHD AMPENLHKFC LLRSKQKAQL EWDRRQAEKG NYKDGHWKIK IKDKRLKTCF 300
  301 EDFCFWESML WHWGETNSTN NSSTTTTSSP PHKTALPSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 1zcvA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Asn
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle