YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CCB3_ARATH
Organism: Arabidopsis thaliana
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB3_ARATH.

Description E-value Query
Range
Subject
Range
gi|8777296 - gi|8777296|dbj|BAA96886.1| unnamed protein product [Arabidopsis thaliana]
121.0 [0..1] [151..1]

Back

Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVTTSFVS FSPALMIFQK KSRRSSPNFR NRSTSLPIVS ATLSHIEEAA TTTNLIRQTN  60
   61 SISESLRNIS LADL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.853 a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit

Predicted Domain #2
Region A:
Residues: [75-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPGTAKLAIG ILGPALSAFG FLFILRIVMS WYPKLPVDKF PYVLAYAPTE PILVQTRKVI  60
   61 PPLAGVDVTP VVWFGLVSFL SEILVGPQGL LVLVSQQQVN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.30103
Match: PF02325.8
Description: No description for PF02325.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle