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View Structure Prediction Details

Protein: COX5C_HORVU
Organism: Hordeum vulgare
Length: 63 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX5C_HORVU.

Description E-value Query
Range
Subject
Range
COX5C_ORYSJ - Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3
COX5C_ORYSA - Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c) - Oryza sativa (R...
114.0 [0..1] [63..1]
CX5C2_ARATH - Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1
111.0 [0..1] [63..1]
CX5C2_HELAN - Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1
111.0 [0..1] [63..1]
COX5C_IPOBA - Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3
108.0 [0..1] [63..1]
gi|4105786 - gi|4105786|gb|AAD02550.1| PGPS/D8 [Petunia x hybrida]
98.0 [0..3] [63..2]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGRVAHAT LKGPSVVKEI FIGLTLGLVA GGMWKMHHWN EQRKTRSFYD MLEKGQISVV  60
   61 VEE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.568636
Match: PF05799.3
Description: No description for PF05799.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.698 N/A N/A a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.654 N/A N/A a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.573 N/A N/A a.4.7 Ribosomal protein L11, C-terminal domain
View Download 0.528 N/A N/A a.4.7 Ribosomal protein L11, C-terminal domain
View Download 0.478 N/A N/A a.2.15 Description not found.
View Download 0.470 N/A N/A a.272.1 Description not found.
View Download 0.461 N/A N/A a.4.1 Homeodomain-like
View Download 0.430 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.430 N/A N/A d.15.7 Immunoglobulin-binding domains


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