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View Structure Prediction Details

Protein: AI5L1_ARATH
Organism: Arabidopsis thaliana
Length: 331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AI5L1_ARATH.

Description E-value Query
Range
Subject
Range
gi|13346153 - gi|13346153|gb|AAK19600.1|AF334207_1 bZIP protein DPBF2 [Arabidopsis thaliana]
214.0 [0..1] [331..1]

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Predicted Domain #1
Region A:
Residues: [1-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFESETSN FHVYNNHEIQ TQPQMQTFLS EEEPVGRQNS ILSLTLDEIQ MKSGKSFGAM  60
   61 NMDEFLANLW TTVEENDNEG GGAHNDGEKP AVLPRQGSLS LPVPLCKKTV DEVWLEIQNG 120
  121 VQQHPPSSNS GQNSAENIRR QQTLGEITLE DFLVKAGVVQ EPLKTTMRMS SSDFGYNPEF 180
  181 GVGLHCQNQN NYGDNRSVYS ENRPFYSVLG ESSSCMTGNG RSNQYLTGLD AFRIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [236-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRIIDGPPEI LMERRQRRMI KNRESAARSR ARRQAYTVEL ELELNNLTEE NTKLKEIVEE  60
   61 NEKKRRQEII SRSKQVTKEK SGDKLRKIRR MASAGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1gtwA
Description: CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle