YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10183645, gi\|...
Organism:	Arabidopsis thaliana
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10183645, gi|....

Description	E-value	Query Range	Subject Range
gi\|51091318, gi\|... - gi\|51091318\|dbj\|BAD36053.1\| putative beta-1,2-N- acetylglucosaminyltransferase II [Oryza sativa Japo...	596.0	[0..41]	[428..57]
gi\|4755201, gi\|2... - gi\|4755201\|gb\|AAD29068.1\| putative N-acetylglucosaminyltransferase [Arabidopsis thaliana], pir\|\|B844...	589.0	[0..60]	[430..49]
gi\|102140018 - gi\|102140018\|gb\|ABF70149.1\| N-acetylglucosaminyltransferase, putative [Musa acuminata]	587.0	[0..60]	[422..113]
MGAT2 - mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase gi\|124000699, gi... - gi\|124000699\|gb\|ABM87858.1\| mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransfer...	584.0	[0..20]	[420..12]
gi\|114652879 - gi\|114652879\|ref\|XP_001152220.1\| PREDICTED: mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylgluc...	584.0	[0..20]	[420..12]
gi\|61889368 - gi\|61889368\|emb\|CAI72505.1\| beta 1,2 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...	584.0	[0..54]	[428..55]
MGAT2_RAT - Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat2...	580.0	[0..20]	[420..12]
gi\|57090127 - gi\|57090127\|ref\|XP_537434.1\| PREDICTED: similar to Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylgl...	580.0	[0..20]	[420..12]
gi\|26350497 - gi\|26350497\|dbj\|BAC38888.1\| unnamed protein product [Mus musculus]	576.0	[0..20]	[420..12]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLWKKQRL RDTGLCRLGI LFAVTLSIVL MLVSVPRTAL NGSSIDDDLD GLDKDLEAKL  60
   61 NASLLSVARG NRMSLRLHRR NHFSPRNTDL FPDLAKDRVV IVLYVHNRAQ YFRVTVESLS 120
  121 KVKGISETLL IVSHDGYFEE MNRIVESIKF CQVKQIFSPY SPHIYRTSFP GVTLNDCKNK 180
  181 GDEAKGHCEG NPDQYGNHRS PKIVSLKHHW WWMMNTVWDG LEETKGHEGH ILFIEEDHFL 240
  241 FPNAYRNIQT LTRLKPAKCP DCFAANLAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [270-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVKSRGEGL ESLVAERMGN VGYSFNRSVW ENIHQKAREF CFFDDYNWDI T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [321-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWATVFPSFG SPVYTLRGPR TSAVHFGKCG LHQGRGDEGD CIDNGVVNIE VKETDKVVNI  60
   61 KEGWGVRVYK HQAGYKAGFE GWGGWGDDRD RHLCLDFATM YRYSSSSASP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits