YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTCN_ARGRE
Organism:	Argyrosomus regius
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTCN_ARGRE.

Description	E-value	Query Range	Subject Range
gi\|58286828 - gi\|58286828\|gb\|AAV80233.1\| osteocalcin [Dicentrarchus labrax]	146.0	[0..1]	[97..1]
OSTCN_SPAAU - Osteocalcin OS=Sparus aurata GN=bglap PE=1 SV=2	145.0	[0..1]	[97..1]
gi\|71025156 - gi\|71025156\|gb\|AAQ13575.1\|AF144707_1 osteocalcin [Halobatrachus didactylus]	135.0	[0..1]	[97..1]
gi\|56789990 - gi\|56789990\|gb\|AAW30003.1\| bone Gla protein [Solea senegalensis]	129.0	[0..1]	[97..1]
gi\|37729652, gi\|... - gi\|37729652\|gb\|AAO53254.1\| osteocalcin [Danio rerio], gi\|139949243\|ref\|NP_001077326.1\| hypothetical ...	123.0	[0..1]	[97..1]
gi\|89994012, gi\|... - gi\|90962984\|ref\|NP_001035098.1\| bone gamma-carboxyglutamate (gla) protein [Ovis aries], gi\|89994012\|...	117.0	[0..6]	[95..5]
OSTCN_XENLA - Osteocalcin OS=Xenopus laevis GN=bglap PE=1 SV=2	116.0	[0..1]	[95..1]
gi\|46575806 - gi\|46575806\|dbj\|BAD16774.1\| osteocalcin [Rana catesbeiana]	111.0	[0..1]	[95..1]
CCDS1134.1_1 - null OSTCN_MACNE - Osteocalcin OS=Macaca nemestrina GN=BGLAP PE=3 SV=1 OSTCN_MACMU - Osteocalcin OS=Macaca mulatta GN=BGLAP PE=3 SV=1 OSTCN_ATEGE - Osteocalcin OS=Ateles geoffroyi GN=BGLAP PE=3 SV=1	109.0	[0..18]	[95..16]
BGLAP, OSTC - oligosaccharyltransferase complex subunit, bone gamma-carboxyglutamate (gla) protein OSTCN_GORGO - Osteocalcin OS=Gorilla gorilla gorilla GN=BGLAP PE=1 SV=2 gi\|120974391 - gi\|120974391\|gb\|ABM46680.1\| BGLAP [Gorilla gorilla]	107.0	[0..18]	[95..16]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLAILVLC SLAAICLTSS ASAGAQPAGD SPVQGGLFME KDQASAVVRQ TRAAKELTLA  60
   61 QTESLREVCE TNMACDEMAD AQGIVAAYQA FYGPIPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.437	a.29.16	Description not found.
View	Download	0.380	a.7.5	Tubulin chaperone cofactor A
View	Download	0.380	a.7.5	Tubulin chaperone cofactor A
View	Download	0.376	a.64.1	Saposin
View	Download	0.348	a.64.1	Saposin
View	Download	0.348	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.348	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.302	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.279	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits