YRC Public Data Repository - Protein Structure Prediction

Protein:	EDF1_CHICK
Organism:	Gallus gallus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EDF1_CHICK.

Description	E-value	Query Range	Subject Range
gi\|73967496 - gi\|73967496\|ref\|XP_537793.2\| PREDICTED: similar to endothelial differentiation-related factor 1 isof...	147.0	[0..1]	[148..43]
EDF1_XENLA - Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1	144.0	[0..1]	[147..1]
gi\|109109703 - gi\|109109703\|ref\|XP_001092659.1\| PREDICTED: similar to endothelial differentiation-related factor 1 ...	144.0	[0..1]	[129..1]
gi\|60832184 - gi\|60832184\|gb\|AAX37000.1\| endothelial differentiation-related factor 1 [synthetic construct]	144.0	[0..1]	[148..1]
EDF1 - endothelial differentiation-related factor 1 ENSCJAT00000021760 - null EDF1_BOVIN - Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1 gi\|109109699 - gi\|109109699\|ref\|XP_001092893.1\| PREDICTED: similar to endothelial differentiation-related factor 1 ... gi\|61360060, gi\|... - gi\|61360069\|gb\|AAX41806.1\| endothelial differentiation-related factor 1 [synthetic construct], gi\|61...	144.0	[0..1]	[148..1]
gi\|109469565, gi... - gi\|62644742\|ref\|XP_215993.2\| PREDICTED: similar to Endothelial differentiation-related factor 1 (EDF...	143.0	[0..1]	[148..44]
EDF1_MOUSE - Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1 EDF1_RAT - Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1	143.0	[0..1]	[148..1]
gi\|47218676 - gi\|47218676\|emb\|CAG12400.1\| unnamed protein product [Tetraodon nigroviridis]	141.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESDWDTVT VLRKKGPSAA QAKSKQAVLA AQRRGEDVET SKKWAAGQNK QHFITKNTAK  60
   61 LDRE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.236572
Match:	PF08523.1
Description:	No description for PF08523.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [65-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEELHHDRVP LEVGKVIQQG RQSKGMTQKD LATKINEKPQ VIADYESGRA IPNNQVMGKI  60
   61 ERAIGLKLRG KDIGKPLETG PKGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1x57A
Description:	Solution structures of the HTH domain of human EDF-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits