YRC Public Data Repository - Protein Structure Prediction

Protein:	RL34_ICTPU
Organism:	Ictalurus punctatus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL34_ICTPU.

Description	E-value	Query Range	Subject Range
gi\|109094513 - gi\|109094513\|ref\|XP_001107418.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta]	177.0	[0..1]	[117..28]
gi\|50776426 - gi\|50776426\|ref\|XP_423263.1\| PREDICTED: similar to ribosomal protein L34; 60S ribosomal protein L34,...	173.0	[0..2]	[117..247]
gi\|47206357 - gi\|47206357\|emb\|CAG12549.1\| unnamed protein product [Tetraodon nigroviridis]	171.0	[0..1]	[117..1]
gi\|60834772 - gi\|60834772\|gb\|AAX37110.1\| ribosomal protein L34 [synthetic construct]	171.0	[0..1]	[117..1]
gi\|89628429 - gi\|89628429\|gb\|ABD77505.1\| 60S ribosomal protein L34-like protein [Ovis aries]	171.0	[0..1]	[116..12]
gi\|50369170, gi\|... - gi\|89268915\|emb\|CAJ83240.1\| ribosomal protein L34b [Xenopus tropicalis], gi\|52346120\|ref\|NP_00100510...	170.0	[0..1]	[117..1]
RL34_MOUSE - 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=1 SV=2 gi\|55715856 - gb\|AAH86096.1\| Unknown (protein for MGC:98475) [Xenopus laevis] gi\|55742885, gi\|... - ref\|NP_081000.1\| ribosomal protein L34 [Mus musculus], ref\|NP_001005859.1\| ribosomal protein L34 [M...	170.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRLTYRRT VSYNTTSNKT RLSRTPGNRI VYLYTKKTGK APKSACGICP GRLRGIRAVR  60
   61 PQVLMRLSKT KKHVSRAYGG SMCAKCVRDR IKRAFLIEEQ KIVVKVLKAQ AQSQKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.148742
Match:	PF01199.9
Description:	No description for PF01199.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.476	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.476	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.435	N/A	N/A	a.4.3	ARID-like
View	Download	0.371	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.356	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.356	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.349	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.331	N/A	N/A	b.40.3	TIMP-like
View	Download	0.203	N/A	N/A	b.71.1	Glycosyl hydrolase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits