YRC Public Data Repository - Protein Structure Prediction

Protein:	RL30_ICTPU
Organism:	Ictalurus punctatus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL30_ICTPU.

Description	E-value	Query Range	Subject Range
gi\|94394262, gi\|... - gi\|94394262\|ref\|XP_980411.1\| PREDICTED: similar to ribosomal protein L30 [Mus musculus], gi\|94393498...	142.0	[0..1]	[115..47]
gi\|67764180 - gi\|67764180\|gb\|AAY79221.1\| 60S ribosomal protein L30 [Siniperca chuatsi] gi\|182636876 - gi\|182636876\|gb\|ACB97649.1\| 60S ribosomal protein L30 [Paralichthys olivaceus]	140.0	[0..1]	[113..1]
gi\|60417176 - gi\|60417176\|emb\|CAH57699.1\| 60S ribosomal protein L30 [Platichthys flesus]	140.0	[0..1]	[113..1]
gi\|52346132, gi\|... - gi\|52346132\|ref\|NP_001005110.1\| MGC89963 protein [Xenopus (Silurana) tropicalis], gi\|49903584\|gb\|AAH...	139.0	[0..1]	[116..1]
gi\|22758848 - gi\|22758848\|gb\|AAN05584.1\| ribosomal protein L30 [Argopecten irradians]	139.0	[0..1]	[113..1]
gi\|62901830 - gi\|62901830\|gb\|AAY18866.1\| RPL30 [synthetic construct]	138.0	[0..2]	[115..13]
gi\|115929548, gi... - gi\|72005286\|ref\|XP_783150.1\| PREDICTED: similar to ribosomal protein L30 [Strongylocentrotus purpura...	137.0	[0..1]	[114..1]
gi\|32450032, gi\|... - gi\|32450032\|gb\|AAH53758.1\| Rpl30-prov protein [Xenopus laevis], gi\|147904232\|ref\|NP_001080621.1\| rib...	137.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAKKTKKS LESINSRLQL VMKSGKYVLG YKQSQKMIRQ GKAKLVILAN NCPALRKSEI  60
   61 EYYAMLSKTG VHHYSGNNIE LGTACGKYYR VCTLAIIDPG DSDIIRSMPD QQQGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1yshC
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits