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View Structure Prediction Details

Protein: TPS01_ARATH
Organism: Arabidopsis thaliana
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS01_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
699.0 [0..62] [598..17]

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Predicted Domain #1
Region A:
Residues: [1-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSISLVVNM QCISAYGSIL SLPLRSNLFS VRKLSSFPHK SFSGQHGKLV RMKATPTRAC  60
   61 HDQESNRKFK RLPLSKWGHH FLSAQVDVSE MNALAQEIER LKPEVGEMLM FSSKSIESTK 120
  121 KRILFIYMLV SLGVAFHFED EIEQSLEEGF EKIQEMIAGE DDLYTISIMF WVFRTYGYNM 180
  181 STDVFKRFKG ENEKFMESIT SDVKGMVSLY EAAHLRTTRE DILEEALSFT TRNLESLARA 240
  241 GASSPHILMR IRNALCMPQH YNAEMIFARE YISFYEQEED HNKMLLRFAK INFKFLQLNW 300
  301 IQELKTLTKW WKQQDLASKL PPYFRDRLIE CYLFAIMIYF EPQFSLGRVS LAKINTVFTL 360
  361 VDDTCDRYGN VSEVAALVQC VERWDPDCMD SLPDYMKTVF KFAWNTFEEC ENAGIMEEGL 420
  421 SYDVQGALEE WEQGDVVPTF DEYLEIGGVE VTMYVSIACS FLGLGQSSRE QAYKWLKSRP 480
  481 KFVEAQAKRA RLMNDIAGFE GDMSRGFDVN AIMYYMKQYK VTEEETFTRL QKMARDLDTT 540
  541 VNEEILKTTK SVPRQILKRA IDFGKMIEFT YRSGEEYTHP EGRFKDHITS LFVDLIRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle