| Protein: | SRD2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 375 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRD2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
481.0 | [0..1] | [375..88] |
|
|
409.0 | [0..1] | [375..79] |
|
|
344.0 | [0..1] | [373..13] |
|
|
307.0 | [0..124] | [374..168] |
|
|
307.0 | [0..124] | [374..168] |
|
|
306.0 | [0..124] | [374..167] |
|
|
306.0 | [0..124] | [374..166] |
|
|
305.0 | [0..124] | [374..163] |
|
|
304.0 | [0..114] | [375..4] |
|
|
302.0 | [0..60] | [374..96] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MAMKEAFPED YLSQEELEPS LNVSHHENPL AGRAKRKRTV KNTEVKKRTL KNTEVMKMTE 60
61 KKTEEAYLVK VEQLAKLKQK QEEDKAAVTL HCFSKTSETG KDVVAPPEGF EQMQSLRFID 120
121 NN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.426 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.426 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.407 | a.24.18 | Description not found. |
| View | Download | 0.397 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.390 | a.22.1 | Histone-fold |
| View | Download | 0.363 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.363 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.340 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.309 | a.39.2 | Insect pheromon/odorant-binding proteins |
|
Region A: Residues: [123-186] |
1 11 21 31 41 51
| | | | | |
1 YTKLKPSDIQ GQVDPLFPEV ILCVEIYNSR KVKTQEFLVL GRQMLTELKD NIHCATDQVM 60
61 QKAG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.732 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.538 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.521 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.519 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.505 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.486 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.461 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.451 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.424 | N/A | N/A | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
|
Region A: Residues: [187-284] |
1 11 21 31 41 51
| | | | | |
1 KYDPSGYFLI EDVFHNDLRN PSAKDYSYPI LDWLWNSKDE ALKKWECVLT GELQKKQKLV 60
61 LGEAKSVDLP RYRTADMQST HFCDIRFRVG ASYVYCHQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.687 | a.7.14 | Description not found. |
| View | Download | 0.583 | a.46.1 | Methionine synthase domain |
| View | Download | 0.507 | a.29.8 | Description not found. |
| View | Download | 0.487 | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| View | Download | 0.471 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.471 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.452 | a.46.1 | Methionine synthase domain |
| View | Download | 0.413 | a.1.1 | Globin-like |
|
Region A: Residues: [285-375] |
1 11 21 31 41 51
| | | | | |
1 GDCKHTIVIR DMRMSHPEDV QNRAAYPIMF WPKRRIQKCG VCKIKRASKV AVDDKWASEN 60
61 SSYFCDVCFE LLHSEEGPLN CDFPVFDYVH E
|
| Detection Method: | |
| Confidence: | 1.03 |
| Match: | 1v5nA |
| Description: | Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
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