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View Structure Prediction Details

Protein: gi|15450409, gi|...
Organism: Arabidopsis thaliana
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15450409, gi|....

Description E-value Query
Range
Subject
Range
gi|79320934 - gi|79320934|ref|NP_001031256.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana]
196.0 [0..17] [299..21]

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Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILHFSPSS SISTIIHRPR RKIMALRDSI KTQMNLITTE SVSSFRFCPC GRRHFIGAAM  60
   61 TSMPFLPISP SHASTSTEDL KRLRPPKPDW YEEFFAWSMN SEVESYEKEV SDYKMKLFDN 120
  121 LVGKAEKVLE IGIGTGPNFK YYTDIPNVSV IGIDPNAKME SYARKSATEA GLKPEEFTFV 180
  181 HALGESIPLE DASVDAVVGT LVLCSVTDVT QTLKEIKRIL RPGGIYIFIE HVAAEDGTFL 240
  241 RLVQTVLDPL QQVVADGCHL TRHTGESILE ARFNGGADVK KTSLSRLAYI SSHVYGVAYN 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.09691
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle