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View Structure Prediction Details

Protein: TI110_ARATH
Organism: Arabidopsis thaliana
Length: 1016 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TI110_ARATH.

Description E-value Query
Range
Subject
Range
gi|20466768 - gi|20466768|gb|AAM20701.1| chloroplast inner envelope protein, putative [Arabidopsis thaliana]
1737.0 [0..1] [1016..1]

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Predicted Domain #1
Region A:
Residues: [1-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS  60
   61 VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL AASLATGYGL GLRLAGSRNI 120
  121 AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK 180
  181 GDEAFQAEIC DIYCRYVTSV LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR 240
  241 IFRQRLET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [249-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEREGDAEQR RAFMRLVYVS ALVFGDASSF LLPWKRVLKV TDAQVEIAIR ENAKQLYAER  60
   61 LKLVGRDINV ENLVDLRKSQ LSFKLSDELA EDLFREHTRK VVVENISSAL SILKSRTR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [367-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAKSLASVVE ELEKVLEFNN LLVSLKSHSE ADQFARGVGP ISLIGDESDF ERRMDDLKLL  60
   61 YRAYVTDALS GGRLEENKLV AMSQLRNILG LGKREAEAIS VDVTSKSYRK RLANAVSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [485-690]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLEAQDSKA KYLQKLCEEL HFDAQKAGAI HEEIYRQKLQ QCVTDGELSD DNVAALLRLR  60
   61 VMLCIPQQTV DTAHAEICGT IFEKVVRDAI SSGVDGYDAE TRKSVRKAAH GLRLSRETAM 120
  121 SIASKAVRRV FTNYIRRARA AENRTDSAKE LKKMIAFNTL VVTEMVADIK GESSDKAPEE 180
  181 DPVQEKEEDD EDEEWGSLES LRKTRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [691-815]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKELAEKMGK PGQTEITLKD DLPDRDRIDL YKTYLLYCVT GEVTRIPFGA QITTKRDDSE  60
   61 YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF RQQAEVILAD GQLTKARVEQ LDELQKQVGL 120
  121 PQPQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [816-1016]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKVIKNITTT KMANAIETAV NQGRLNIKQI RELKEANVSL DSMIAVSLRE KLFKKTVSDI  60
   61 FSSGTGEFDE TEVYQTIPSD LSIDVEKAKR VVHDLAQSRL SNSLVQAVAL LRQRNSKGVV 120
  121 LSLNDLLACD KAVPAEPMSW EVSEELSDLY AIYSKSDPKP APEKVLRLQY LLGIDDSTAT 180
  181 ALREMEDGAL SSAAEEGNFV F

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle