| Protein: | RNP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 411 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
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243.0 | [0..4] | [370..189] |
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243.0 | [0..4] | [370..189] |
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242.0 | [0..4] | [370..189] |
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241.0 | [0..4] | [370..189] |
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Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL 60
61 DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS SGGDAYNKTK KIFVGGLPPT 120
121 LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV 180
181 EVKRALPKDA NPGGG
|
| Detection Method: |  |
| Confidence: | 49.69897 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [196-306] |
1 11 21 31 41 51
| | | | | |
1 GRSMGGGGSG GYQGYGGNES SYDGRMDSNR FLQHQSVGNG LPSYGSSGYG AGYGNGSNGA 60
61 GYGAYGGYTG SAGGYGAGAT AGYGATNIPG AGYGSSTGVA PRNSWDTPAS S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.280 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.257 | a.74.1 | Cyclin-like |
| View | Download | 0.246 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.234 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.217 | a.218.1 | Description not found. |
| View | Download | 0.215 | a.247.1 | Description not found. |
| View | Download | 0.211 | a.74.1 | Cyclin-like |
|
Region A: Residues: [307-411] |
1 11 21 31 41 51
| | | | | |
1 GYGNPGYGSG AAHSGYGVPG AAPPTQSPSG YSNQGYGYGG YSGSDSGYGN QAAYGVVGGR 60
61 PSGGGSNNPG SGGYMGGGYG DGSWRSDPSQ GYGGGYNDGQ GRQGQ
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
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