| Protein: | RLM3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 796 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLM3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
436.0 | [0..2] | [701..4] |
|
|
423.0 | [0..4] | [678..77] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MKSSSSQSYD VFPNFRGEDV RHSLVSHLRK ELDRKFINTF NDNRIERSRK ITPELLLAIE 60
61 NSRISLVVFS KNYASSTWCL DELVKIQECY EKLDQMVIPI FYKVDPSHVR KQTGEFGMVF 120
121 GETCKGRTEN EKRKWMRALA EVAHLAGEDL RNWRSEAEML ENIAKDVSNK LFPPSNNF
|
| Detection Method: |  |
| Confidence: | 4.34 |
| Match: | 1fyvA |
| Description: | Toll-like receptor 1, TLR1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [179-556] |
1 11 21 31 41 51
| | | | | |
1 SDFVGIEAHI EALISMLRFD SKKARMIGIC GPSETGKTTI GRALYSRLKS DFHHRAFVAY 60
61 KRKIRSDYDQ KLYWEEQFLS EILCQKDIKI EECGAVEQRL KHTKVLIVLD DVDDIELLKT 120
121 LVGRIRWFGS ESKIVVITQK RELLKAHNIA HVYEVGFPSE ELAHQMFCRY AFGKNSPPHG 180
181 FNELADEAAK IAGNRPKALK YVGSSFRRLD KEQWVKMLSE FRSNGNKLKI SYDELDGKGQ 240
241 DYVACLTNGS NSQVKAEWIH LALGVSILLN IRSDGTTILK HLSYNRSMAQ QAKIWWYENL 300
301 ERVCKKYNIC GIDSSTDGGG STYGQCSNSQ FQRNMDASPG GNKTSNQSTK DSPRASQVEK 360
361 EKIEYCEPHV YITPAIFS
|
| Detection Method: | |
| Confidence: | 18.30103 |
| Match: | 1z6tA |
| Description: | Structure of the apoptotic protease-activating factor 1 bound to ADP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [557-662] |
1 11 21 31 41 51
| | | | | |
1 DGTRAPKYVE SSSRRVTQVH HAKTWWPENC EKVYENHNNI YGIDRSIDGG DKFEGKSKVS 60
61 DGGLDGKDQG SMYGQSSNSE LQINMDADNR RCEPVSEMLF KNYNVC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.326 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.229 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.223 | a.261.1 | Description not found. |
|
Region A: Residues: [663-796] |
1 11 21 31 41 51
| | | | | |
1 SPNGLTDVNC SNPQSQRKLD ASLKKDKIVH EWIRTGSGFF FDFQGPKSIV SAAQVDEKNF 60
61 EYCEQGVYIT LGILSGGIIV LKHLEFSRRM AQQAKVWWSE NWIKVYQEHN ICGIDKSFDG 120
121 RFDDRRVIRQ LRPN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.781 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.728 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.722 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.709 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.707 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.705 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.701 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.676 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.669 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.669 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.657 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.640 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.630 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.624 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.576 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
