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View Structure Prediction Details

Protein: gi|30684839, gi|...
Organism: Arabidopsis thaliana
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30684839, gi|....

Description E-value Query
Range
Subject
Range
gi|15221421, gi|... - gi|20148505|gb|AAM10143.1| unknown protein [Arabidopsis thaliana], gi|17065432|gb|AAL32870.1| Unknow...
190.0 [0..1] [205..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISTWFRY MAHKLEYSLT LSLKSHRSNK LSDRELIQII CKNLFYGKIT YLHSDKGPEM  60
   61 SPTMTANENT LLIRKIPIAN TRFVFIGDAV VLKDPNDSDK YLVRRLAAVE GFEMVSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [118-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKEEPFVLE KNQCWVTAEN QELKAKEAYD SRTFGPVSTA DIVGRAIYCL RTAVDHGPVR  60
   61 NSQTAMGQDS PILAVELDVD EMAKNHKA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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