YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28416547, gi\|...
Organism:	Arabidopsis thaliana
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28416547, gi|....

Description	E-value	Query Range	Subject Range
gi\|7268395, gi\|2... - pir\|\|C71431 hypothetical protein - Arabidopsis thaliana, gi\|7268395\|emb\|CAB78687.1\| hypothetical pr...	145.0	[0..1]	[106..1]
gi\|85118710 - gi\|85118710\|ref\|XP_965490.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32417142, gi\|... - gi\|32417142\|ref\|XP_329049.1\| hypothetical protein [Neurospora crassa], gi\|28927300\|gb\|EAA36254.1\| hy...	140.0	[0..5]	[101..11]
gi\|88182614, gi\|... - gi\|88182614\|gb\|EAQ90082.1\| hypothetical protein CHGG_06701 [Chaetomium globosum CBS 148.51], gi\|1161...	140.0	[0..6]	[101..79]
NUXM_NEUCR - NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A... NUXM_NEUCR - NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Neurospora crassa GN=nuo-21 PE=1 SV=1	138.0	[0..5]	[101..11]
gi\|38175483, gi\|... - gi\|50945999\|ref\|XP_482527.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|38175483\|d...	132.0	[0..1]	[101..86]
gi\|90300137, gi\|... - gi\|90300137\|gb\|EAS29768.1\| hypothetical protein CIMG_08514 [Coccidioides immitis RS], gi\|119179557\|r... gi\|240110144 - gi\|240110144\|gb\|EER28303.1\| NADH-ubiquinone oxidoreductase 21 kDa subunit, putative [Coccidioides po...	131.0	[0..7]	[101..13]
gi\|67541625, gi\|... - gi\|67541625\|ref\|XP_664580.1\| hypothetical protein AN6976.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	130.0	[0..2]	[101..6]
gi\|83775266 - gi\|83775266\|dbj\|BAE65388.1\| unnamed protein product [Aspergillus oryzae] gi\|238508829, gi... - gi\|238508829\|ref\|XP_002385597.1\| NADH-ubiquinone oxidoreductase 21 kDa subunit, putative [Aspergillu... gi\|169784119 - gi\|169784119\|ref\|XP_001826521.1\| hypothetical protein [Aspergillus oryzae RIB40]	130.0	[0..7]	[101..13]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP  60
   61 SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK RGGFSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits