YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AMI1_ARATH
Organism: Arabidopsis thaliana
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMI1_ARATH.

Description E-value Query
Range
Subject
Range
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 364...
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1
485.0 [0..6] [423..35]

Back

Predicted Domain #1
Region A:
Residues: [1-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA  60
   61 TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP RNPIAFDRVP GGSSSGSAVA 120
  121 VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA 180
  181 TLKRVGCVLL QQHHLNPIEP SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK 240
  241 VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV 300
  301 KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ 360
  361 ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV SVSLVAKYGS DGFLLSLVDS 420
  421 LAAFI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 2df4A
Description: No description for 2df4A was found.

Predicted functions:

Term Confidence Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 7.42914157198604 bayes_pls_golite062009
ligase activity 3.16753436373904 bayes_pls_golite062009
binding 1.29965583137169 bayes_pls_golite062009
catalytic activity 0.906509857495572 bayes_pls_golite062009
protein binding 0.583347864945253 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.301483171038292 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle