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View Structure Prediction Details

Protein: gi|15220954, gi|...
Organism: Arabidopsis thaliana
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220954, gi|....

Description E-value Query
Range
Subject
Range
gi|15226830, gi|... - pir||T00461 probable berberine bridge enzyme [imported] - Arabidopsis thaliana, gi|3033375|gb|AAC12...
371.0 [0..1] [533..1]

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Predicted Domain #1
Region A:
Residues: [1-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVLMNNTN AFLVTLLLLS LSYIPLSFST IQQDFVMCLV DNSDASFPMD SSFFTHDLNA  60
   61 SSFKLALETS AQNLRYLMPS NPKPEFIFEP LYETHVQAAV LCAKKLKLHL RLRSGGHDYE 120
  121 GLSYVSEMET AFVIVDLSKL RQISVDIESN SAWVHAGASI GEVYYRIQEK SKIHGFPAGL 180
  181 CTSLGIGGHI IGGAYGSMMR KFGLGADNVL DARIVDADGK ILNRAAMGED VFWAIRGGGG 240
  241 GSFGVILAWK IKLVPVPEIV TVFTVTRTLE QDGTKLLYKW QQVADKLDED LFIRVIIQPT 300
  301 SKTPKSKERT ISTSYQGQFL GDANRLLQVM QRSFPQLGLT KKDCLETSWI KSVMYIAGFP 360
  361 STAPSEALLD GKSLFKNYFK AKSDYVEEPI PVEGLEGLWE KLLEEDSPLT IWNPYGGMMA 420
  421 KIPETETPFP HRSGTLFKIQ WLTLWQDGKT SEAKHMGWMR EMYSYMEQYV SKSPRSAYVN 480
  481 YRDLDLGMNG KGSDAREWGN RYFKGNFERL VEIKAKFDPE NFFRHEQSIP TELE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle